Locus 3002

Sequence ID 3L_DroMel_CAF1
Location 8,638,626 – 8,638,719
Length 93
Max. P 0.626234
window4685

overview

Window 5

Location 8,638,626 – 8,638,719
Length 93
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -28.87
Consensus MFE -15.64
Energy contribution -17.75
Covariance contribution 2.11
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.54
SVM decision value 0.19
SVM RNA-class probability 0.626234
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8638626 93 - 23771897
----UG--GGUGUCCU-GGUGUUCGGGGCGAAAAGUCCUUCGAGGAUUGUUGCAAAUUAUGCGAAAUUAUGUCAUGCCGUGAGGCGGUCGA-AAAAGGACA
----..--..((((((-(.....)))))))....(((((((((.(((..(((((.....)))))......))).((((....)))).))))-...))))). ( -31.90)
>DroVir_CAF1 29578 85 - 1
GCUGUGCCUGUGUGCC-GUUGUCCUGG-C--UGGGUCCUUGGAAUACGCUGGUAAAUUAGGCAAAAUUAUGUCAUGCCGCGAGGCGAUU------------
(((.((((.(((((((-(..(.(((..-.--.))).)..)))..))))).)))).....)))............((((....))))...------------ ( -26.90)
>DroSec_CAF1 26819 93 - 1
----UG--GGUGUCCU-GGUGUUCGGGGCGAAAGGUCCUUCGAGGAUUGUUGCAAAUUAUGCGAAAUUAUGUCAUGCCGUGAGGCGGUCGA-AAAAGGACA
----..--..((((((-.......(((.(....).)))(((((.(((..(((((.....)))))......))).((((....)))).))))-)..)))))) ( -31.80)
>DroSim_CAF1 24057 93 - 1
----UG--GGUGUCCU-GGUGUUCGGGGCGAAAGGUCCUUCGAGGAUUGUUGCAAAUUAUGCGAAAUUAUGUCAUGCCGUGAGGCGGUCGA-AAAAGGACU
----..--..((((((-(.....)))))))...((((((((((.(((..(((((.....)))))......))).((((....)))).))))-...)))))) ( -31.90)
>DroEre_CAF1 28169 82 - 1
GUCCU------------GGUGCUAUGGGCGAAAAGUCCUUCGAGGAUUGUUGAAAAUUAUGCGAAAUUAUGUCAUGCCGUGAGGCGGUCGA--AAA-----
(.((.------------.(((.(((((((.....))))((((..((((......))))...))))...))).)))(((....))))).)..--...----- ( -21.20)
>DroYak_CAF1 27779 99 - 1
GUUCUG--CGUGUCCUGGGUGCUAUGGGCGAAAAGUCCUUCGAGGAUUGUUGCAAAUUAUGCGAAAUUAUGUCAUGCCGUGAGGCGGUCAAGAAAAGGACA
((((((--((.(((((.((......((((.....)))).)).)))))...)))................((.(.((((....))))).)).....))))). ( -29.50)
>consensus
____UG__GGUGUCCU_GGUGUUCGGGGCGAAAAGUCCUUCGAGGAUUGUUGCAAAUUAUGCGAAAUUAUGUCAUGCCGUGAGGCGGUCGA_AAAAGGACA
...........(((((.........((((.....)))).((((.(((..(((((.....)))))......))).((((....)))).))))....))))). (-15.64 = -17.75 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:08 2006