| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,626,276 – 8,626,388 |
| Length | 112 |
| Max. P | 0.945642 |
| Location | 8,626,276 – 8,626,388 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.69 |
| Mean single sequence MFE | -28.24 |
| Consensus MFE | -15.13 |
| Energy contribution | -16.01 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8626276 112 - 23771897 CCAUUU-UU-UUUUUCGCUCGCCAGCCGCCUUCGGCUUGCAACUUUGUUUGGCGCUAAUUUAUAGUUGGCAACGACUGUUUGG-CUUUUGCGCGAAAUUACUGUCUGUAGUUUUA ......-..-...(((((.(((((((((....))))..(((....))).))))(((((...(((((((....)))))))))))-)....).)))))(((((.....))))).... ( -33.10) >DroSec_CAF1 14556 112 - 1 UCAAUUUUU-UUUUUCGCCC-CCAGCCGCCUUCGGCUUGCAACUUUGUUUGGCGCUAAUUUAUAGUUGGCAACGACUGUUUGA-CUUUUGCGCGAAAUUACUGUCUGUAAUUUUA .........-......((..-..(((((....))))).))...........((((......(((((((....)))))))....-.....))))((((((((.....)))))))). ( -28.86) >DroSim_CAF1 11735 113 - 1 CCAAUUUUUUUUUUUCGCCC-CCAGCCGCCUUCGGCUUGCAACUUUGUUUGGCGCUAAUUUAUAGUUGGCAUCGACUGUUUGA-CUUUUGCGCGAAAUUACUGUCUGUAAUUUUA ................((..-..(((((....))))).))...........((((......(((((((....)))))))....-.....))))((((((((.....)))))))). ( -25.16) >DroEre_CAF1 16011 105 - 1 CCAAUU------UCUCGCCC-CCAGCGGACUUUGGCUGGCAACUUUGUUGCGCGCUAAUUUAUAGUUGGCUACAACUGUUUGG-CUUUUG--CGAAAUUACGGACUGUAAUUUUA ((((..------((.(((..-...)))))..))))...(((((...)))))(((((((...(((((((....)))))))))))-)....)--)((((((((.....)))))))). ( -29.10) >DroWil_CAF1 20420 103 - 1 CCAAUU------GUUGCUU-----GCUGUG-UUGCAUUGCAACAUUGUUUGUGGCUAAUUUAUCGUUUGCCUGGAUUUUUCGUUCAUUCGCACUAAAUUGCUGCGGGUAAUUUUA ......------((..(..-----((.(((-((((...))))))).))..)..))...........((((((((((.....)))))..(((((......).)))))))))..... ( -25.00) >consensus CCAAUU_UU_UUUUUCGCCC_CCAGCCGCCUUCGGCUUGCAACUUUGUUUGGCGCUAAUUUAUAGUUGGCAACGACUGUUUGA_CUUUUGCGCGAAAUUACUGUCUGUAAUUUUA .......................(((((....)))))..............((((......(((((((....)))))))..........))))((((((((.....)))))))). (-15.13 = -16.01 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:06 2006