Locus 300

Sequence ID 3L_DroMel_CAF1
Location 858,179 – 858,270
Length 91
Max. P 0.578115
window450

overview

Window 0

Location 858,179 – 858,270
Length 91
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 66.76
Mean single sequence MFE -32.28
Consensus MFE -14.36
Energy contribution -16.12
Covariance contribution 1.75
Combinations/Pair 1.29
Mean z-score -1.52
Structure conservation index 0.44
SVM decision value 0.09
SVM RNA-class probability 0.578115
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 858179 91 - 23771897
-------------AC---GUCUCC---GAGGAGGGCAGGGAUGAGCUAUUGUGGUUGAGCUCAUCGGCUACACUGACAGCACCUCCAUUGGGAUGCA---CAGC-CACCUGUUG
-------------.(---(((.((---(((((((.....((((((((..........)))))))).(((........))).))))).)))))))).(---(((.-...)))).. ( -32.90)
>DroSec_CAF1 1232 105 - 1
NNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNCAGGGAUGUGCUGUUGUGGUUGAGCUCAUCGGCUACACUGACAGCACCUCCAUUGGGAUGCA---CAGCCCACCUGUUG
...............---......---........((((((.((((((((((((((((.....)))))))))...))))))).)))..((((.....---...)))).)))... ( -32.30)
>DroEre_CAF1 1260 91 - 1
-------------AC---GUCUCC---GAGGAGGGCAGGGAUGAGCUGUUGUGGUUGAGCUCAUCAGCUACACUGACGGCACCUCCAUUGGGAUGUA---CAGC-CACUUGUUG
-------------((---(((.((---(((((((.((....)).((((((((((((((.....)))))))))...))))).))))).))))))))).---((((-.....)))) ( -36.80)
>DroWil_CAF1 2582 91 - 1
-------------AUGAGGUGUCCGUUGAGGAUGGCAAUGAUGUACUAUUGUGAUUGAGUUCAUCAUUGACCACCAUUUGGCCGCCAUUGGGAUGCA----------UCUGUUG
-------------..((.((((((.....((.(((((((((((.(((..........))).)))))))).)))))...(((...)))...)))))).----------))..... ( -26.60)
>DroYak_CAF1 1215 87 - 1
-------------AC---GUCUCC---GAGGAGGGCAGGGAUGAGCUGUUGUGGUUGAGCUCAUCGGCCACACUGACGGCACCUCCAUUGGGAUGUA---CAGC-CACCU----
-------------((---(((.((---(((((((.((....)).((((((((((((((.....)))))))))...))))).))))).))))))))).---....-.....---- ( -37.40)
>DroAna_CAF1 1204 88 - 1
-------------AC---GUCUCC---GACGAGGGCAGCGACGAGCUGUUGUGAUUGAUUUCGUCCGCCGG------AGCCACUCCGUUGGCGUGCACCACAGC-CACCUGUUG
-------------.(---(((...---))))((((((((.....)))))((((..((....((.(((.(((------((...))))).)))))..)).))))..-..))).... ( -27.70)
>consensus
_____________AC___GUCUCC___GAGGAGGGCAGGGAUGAGCUGUUGUGGUUGAGCUCAUCGGCUACACUGACAGCACCUCCAUUGGGAUGCA___CAGC_CACCUGUUG
....................((((.....))))((((((((((((((..........)))))))).............((((((.....))).)))...........)))))). (-14.36 = -16.12 +   1.75) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006