Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 858,179 – 858,270 |
Length | 91 |
Max. P | 0.578115 |
Location | 858,179 – 858,270 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 66.76 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -14.36 |
Energy contribution | -16.12 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.29 |
Mean z-score | -1.52 |
Structure conservation index | 0.44 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 858179 91 - 23771897 -------------AC---GUCUCC---GAGGAGGGCAGGGAUGAGCUAUUGUGGUUGAGCUCAUCGGCUACACUGACAGCACCUCCAUUGGGAUGCA---CAGC-CACCUGUUG -------------.(---(((.((---(((((((.....((((((((..........)))))))).(((........))).))))).)))))))).(---(((.-...)))).. ( -32.90) >DroSec_CAF1 1232 105 - 1 NNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNCAGGGAUGUGCUGUUGUGGUUGAGCUCAUCGGCUACACUGACAGCACCUCCAUUGGGAUGCA---CAGCCCACCUGUUG ...............---......---........((((((.((((((((((((((((.....)))))))))...))))))).)))..((((.....---...)))).)))... ( -32.30) >DroEre_CAF1 1260 91 - 1 -------------AC---GUCUCC---GAGGAGGGCAGGGAUGAGCUGUUGUGGUUGAGCUCAUCAGCUACACUGACGGCACCUCCAUUGGGAUGUA---CAGC-CACUUGUUG -------------((---(((.((---(((((((.((....)).((((((((((((((.....)))))))))...))))).))))).))))))))).---((((-.....)))) ( -36.80) >DroWil_CAF1 2582 91 - 1 -------------AUGAGGUGUCCGUUGAGGAUGGCAAUGAUGUACUAUUGUGAUUGAGUUCAUCAUUGACCACCAUUUGGCCGCCAUUGGGAUGCA----------UCUGUUG -------------..((.((((((.....((.(((((((((((.(((..........))).)))))))).)))))...(((...)))...)))))).----------))..... ( -26.60) >DroYak_CAF1 1215 87 - 1 -------------AC---GUCUCC---GAGGAGGGCAGGGAUGAGCUGUUGUGGUUGAGCUCAUCGGCCACACUGACGGCACCUCCAUUGGGAUGUA---CAGC-CACCU---- -------------((---(((.((---(((((((.((....)).((((((((((((((.....)))))))))...))))).))))).))))))))).---....-.....---- ( -37.40) >DroAna_CAF1 1204 88 - 1 -------------AC---GUCUCC---GACGAGGGCAGCGACGAGCUGUUGUGAUUGAUUUCGUCCGCCGG------AGCCACUCCGUUGGCGUGCACCACAGC-CACCUGUUG -------------.(---(((...---))))((((((((.....)))))((((..((....((.(((.(((------((...))))).)))))..)).))))..-..))).... ( -27.70) >consensus _____________AC___GUCUCC___GAGGAGGGCAGGGAUGAGCUGUUGUGGUUGAGCUCAUCGGCUACACUGACAGCACCUCCAUUGGGAUGCA___CAGC_CACCUGUUG ....................((((.....))))((((((((((((((..........)))))))).............((((((.....))).)))...........)))))). (-14.36 = -16.12 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006