Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 112,852 – 112,958 |
Length | 106 |
Max. P | 0.939570 |
Location | 112,852 – 112,958 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -22.13 |
Consensus MFE | -17.74 |
Energy contribution | -17.52 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -3.31 |
Structure conservation index | 0.80 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 112852 106 + 23771897 CACUCUUUUUUACCCCAUAACUCUCUAUCUCUCUUCCAGUUCUCCGCGCUCACGAUUUGGUAACUGUGGCCCAAUGCCGCCGUUCCC-AGUUUAGCGCGCUCUCCUU ............................................((((((...((.((((.(((.(((((.....))))).))).))-)).))))))))........ ( -23.20) >DroSec_CAF1 48530 100 + 1 CACUCUUCUUCACACCAUAACUCUCU--CUCUCUUCCAGUUCUCCGCGCUCACG-----GUGACUGUGGCCCAUUGCCGCCGUUCCCCAUCUAAGCGCGCUCUCUUU ..........................--................((((((...(-----(..((.(((((.....))))).))..))......))))))........ ( -21.60) >DroSim_CAF1 54289 102 + 1 CACUCUUUUUCACACCAUAACUCUCUCUCUCUCUUCCAGUUCUCCGCGCUCACG-----GUGACUGUGGCCCAUUGCCGCCGUUCCCCAUCUUAGCGCGCUCUCCUU ............................................((((((...(-----(..((.(((((.....))))).))..))......))))))........ ( -21.60) >consensus CACUCUUUUUCACACCAUAACUCUCU_UCUCUCUUCCAGUUCUCCGCGCUCACG_____GUGACUGUGGCCCAUUGCCGCCGUUCCCCAUCUUAGCGCGCUCUCCUU ............................................((((((...........(((.(((((.....))))).))).........))))))........ (-17.74 = -17.52 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:17 2006