Locus 30

Sequence ID 3L_DroMel_CAF1
Location 112,852 – 112,958
Length 106
Max. P 0.939570
window37

overview

Window 7

Location 112,852 – 112,958
Length 106
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 88.92
Mean single sequence MFE -22.13
Consensus MFE -17.74
Energy contribution -17.52
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -3.31
Structure conservation index 0.80
SVM decision value 1.28
SVM RNA-class probability 0.939570
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 112852 106 + 23771897
CACUCUUUUUUACCCCAUAACUCUCUAUCUCUCUUCCAGUUCUCCGCGCUCACGAUUUGGUAACUGUGGCCCAAUGCCGCCGUUCCC-AGUUUAGCGCGCUCUCCUU
............................................((((((...((.((((.(((.(((((.....))))).))).))-)).))))))))........ ( -23.20)
>DroSec_CAF1 48530 100 + 1
CACUCUUCUUCACACCAUAACUCUCU--CUCUCUUCCAGUUCUCCGCGCUCACG-----GUGACUGUGGCCCAUUGCCGCCGUUCCCCAUCUAAGCGCGCUCUCUUU
..........................--................((((((...(-----(..((.(((((.....))))).))..))......))))))........ ( -21.60)
>DroSim_CAF1 54289 102 + 1
CACUCUUUUUCACACCAUAACUCUCUCUCUCUCUUCCAGUUCUCCGCGCUCACG-----GUGACUGUGGCCCAUUGCCGCCGUUCCCCAUCUUAGCGCGCUCUCCUU
............................................((((((...(-----(..((.(((((.....))))).))..))......))))))........ ( -21.60)
>consensus
CACUCUUUUUCACACCAUAACUCUCU_UCUCUCUUCCAGUUCUCCGCGCUCACG_____GUGACUGUGGCCCAUUGCCGCCGUUCCCCAUCUUAGCGCGCUCUCCUU
............................................((((((...........(((.(((((.....))))).))).........))))))........ (-17.74 = -17.52 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:17 2006