| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 24,089 – 24,198 |
| Length | 109 |
| Max. P | 0.934880 |
| Location | 24,089 – 24,198 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 96.33 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -23.77 |
| Energy contribution | -23.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 24089 109 + 23771897 AUGUAUUGUGGAACCAGAGUUCAUCCACUCGUUGGUGUCAUUUCCACAUCGUUCCUGAGUGUAUAUACUCUUUAGUUUUAUUUCCACCAUUCCUAUGGACAUCUACCAG ((((...(((((((.(((((..((.((((((.((((((.......))))))....)))))).))..)))))...))))))).....((((....))))))))....... ( -23.90) >DroSec_CAF1 13674 109 + 1 AUGUACUGUGGAACCAGAGUUCAUCCACUCCUUGAUGUCGUUUCCACAUCGUUCCUGAGUGUAUAUACUCUUUAGUUCUAUUUCCACCAUUCCUAUGGCCAUCUACCAG .....(((((((((.(((((..((.(((((..((((((.......)))))).....))))).))..)))))...))))))......((((....))))........))) ( -24.50) >DroSim_CAF1 15224 109 + 1 AUGUACUGUGGAACCAGAGUUCAUCCACUCCUUGGUGUCGUUUCCACAUCGUUCCUGAGUGUAUAUACUCUUUAGUUCUAUUUCCACCAUUCCUAUGGCCAUCUACCAG .....(((((((((.(((((..((.(((((..((((((.......)))))).....))))).))..)))))...))))))......((((....))))........))) ( -23.90) >consensus AUGUACUGUGGAACCAGAGUUCAUCCACUCCUUGGUGUCGUUUCCACAUCGUUCCUGAGUGUAUAUACUCUUUAGUUCUAUUUCCACCAUUCCUAUGGCCAUCUACCAG .......(((((((.(((((..((.(((((..((((((.......)))))).....))))).))..)))))...))))))).....((((....))))........... (-23.77 = -23.33 + -0.44)
| Location | 24,089 – 24,198 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 96.33 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -23.64 |
| Energy contribution | -23.76 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 24089 109 - 23771897 CUGGUAGAUGUCCAUAGGAAUGGUGGAAAUAAAACUAAAGAGUAUAUACACUCAGGAACGAUGUGGAAAUGACACCAACGAGUGGAUGAACUCUGGUUCCACAAUACAU .((((..((.(((((.......))))).))...))))..((((......))))........((((((......((((..((((......))))))))))))))...... ( -24.20) >DroSec_CAF1 13674 109 - 1 CUGGUAGAUGGCCAUAGGAAUGGUGGAAAUAGAACUAAAGAGUAUAUACACUCAGGAACGAUGUGGAAACGACAUCAAGGAGUGGAUGAACUCUGGUUCCACAGUACAU (((.....(.(((((....))))).).....(((((..(((((.(((.(((((......((((((....).)))))...))))).))).))))))))))..)))..... ( -31.70) >DroSim_CAF1 15224 109 - 1 CUGGUAGAUGGCCAUAGGAAUGGUGGAAAUAGAACUAAAGAGUAUAUACACUCAGGAACGAUGUGGAAACGACACCAAGGAGUGGAUGAACUCUGGUUCCACAGUACAU (((.....(.(((((....))))).).....(((((..(((((.(((.(((((.((.....((((....).)))))...))))).))).))))))))))..)))..... ( -28.20) >consensus CUGGUAGAUGGCCAUAGGAAUGGUGGAAAUAGAACUAAAGAGUAUAUACACUCAGGAACGAUGUGGAAACGACACCAAGGAGUGGAUGAACUCUGGUUCCACAGUACAU .((((.....))))........((((((..........(((((.(((.(((((........(((....)))........))))).))).)))))..))))))....... (-23.64 = -23.76 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:40 2006