Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,622,466 – 8,622,586 |
Length | 120 |
Max. P | 0.516443 |
Location | 8,622,466 – 8,622,586 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.28 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -29.10 |
Energy contribution | -28.60 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.37 |
Mean z-score | -1.78 |
Structure conservation index | 0.73 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8622466 120 - 23771897 GGUCGCGAGGAGGACGAGGUCAUGGGAGUGAAGUUCUCCAAGGAGCUUAUCCUGUGCCGGGAGCAAAUUGUGCCCAUGACCAAUCCCAACAUGGAGAUGACACCGAUGCAGGAGAAGCUG ........(((((((....((((....)))).)))))))....(((((.((((((..(((..(((.....)))(((((...........)))))........)))..)))))).))))). ( -42.10) >DroVir_CAF1 10887 120 - 1 GGCCGCGAGGAGGAUGAGGUCAUGGGCGUUAAGUUCUCCAAGGAGCUUAUUCUGUGCCGAGAGCAAAUUGUGCCCAUGACCAAUCCGAACAUGGAAAUGACGCCAAUGCAGGAGAAGAUA ((((....)..((((..(((((((((((.((((((((....)))))))).....(((.....))).....))))))))))).))))...(((....)))..)))................ ( -42.70) >DroGri_CAF1 11173 120 - 1 GGUCGUGAGGAGGAUGAGGUUAUGGGUGUCAAGUUCUCCAAGGAGCUCAUCCUGUCGAGGGAUCAAAUUGUGCCCAUGACCAACAACAACAUGGAAAUGACCCCAAUGCAGGAGAAACUA ..((.((.((.((....(((((((((((.(((.(((((..((((.....))))...)))))......))))))))))))))........(((....))).))))....)).))....... ( -36.40) >DroWil_CAF1 15826 120 - 1 GGACGGGAAGAGGAUGAGGUUAUGGGUGUUAAAUUCUCAAAGGAAUUGAUACUAUCACGUGAGCAAAUUGUACCCAUGACCAAUCCGAAUAUGGAAAUGACUCCAAUGCAAGAGAAACUU ...........((((..(((((((((((...((((((((...((..........))...))))..)))).))))))))))).)))).....((((......))))............... ( -30.10) >DroMoj_CAF1 11545 120 - 1 GGCCGCGAAGAGGACGAGGUCAUGGGCGUCAAGUUCUCCAAGGAGCUGAUCCUGUCGCGGGAGCAAAUUGUGCCCAUGACGAAUCCAAACAUGGAAAUGACGCCCAUGCAGGAGAAACUG ((((.((.......)).))))((((((((((((((((....)))))).....(((((.(((.((.....)).))).)))))..((((....))))..)))))))))).(((......))) ( -45.30) >DroAna_CAF1 10712 120 - 1 GGCCGCGAGGAGGAUGAGGUCAUGGGGGUCAAGUUCUCAAAGGAACUGAUCCUCUCCAGGGAGCAAAUCGUCCCGAUGACCAACCCCAACAUGGAGAUGACGCCCAUGCAGGAGAAGCUG ((((....)).......((((((((((((((.(((((....)))))))))))))....((((........)))).))))))..))((..(((((.(......))))))..))........ ( -42.20) >consensus GGCCGCGAGGAGGAUGAGGUCAUGGGCGUCAAGUUCUCCAAGGAGCUGAUCCUGUCCCGGGAGCAAAUUGUGCCCAUGACCAAUCCCAACAUGGAAAUGACGCCAAUGCAGGAGAAACUG (((........((((..(((((((((((...((((((....))))))..(((......))).........))))))))))).))))...(((....)))..)))................ (-29.10 = -28.60 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:05 2006