| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,621,751 – 8,621,868 |
| Length | 117 |
| Max. P | 0.963527 |
| Location | 8,621,751 – 8,621,868 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.56 |
| Mean single sequence MFE | -43.59 |
| Consensus MFE | -32.06 |
| Energy contribution | -31.87 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8621751 117 - 23771897 UAUUUAAUUG---UGAACUCAGGUAUCGCCCUGGAUGGUCACUUGAAGGACGAGGAUGUCAACCUGGCUUCAUCCACCAUGGUGCAGGAGGGCAAGUCCACGGGAGAUGCCUGUGGUAUU ..........---...(((((((((((.((((((((.(((.((((.....)))))))(((..((((.(.((((.....)))).)))))..)))..))))).))).)))))))).)))... ( -42.20) >DroVir_CAF1 10171 116 - 1 UAUCCGUGU----CUUCCUUAGGCAUCGCACUCGAUGGCCAUUUGAAGGAUGAGGAUGUCAACCUGGCCUCCUCGACCAUGGUGCAGGAGGGCAAAAAUACGGGCGAUGCCUGCGGUAUU ...((((((----((((((..(((((((....)))).))).......((.((((((.(((.....))).)))))).)).......)))))))))......(((((...)))))))).... ( -42.90) >DroGri_CAF1 10469 112 - 1 ----UAUAC----CCUUCCCAGGCAUUGCACUCGAUGGCCAUCUGAAGGAUGAGGAUGUCAACUUGGCCUCCUCGACCAUGGUGCAGGAGGGCAAGAACACGGGCGAUGCCUGCGGUAUU ----.((((----(.....((((((((((.(.((.((((.((((.........)))))))).((((.((((((..((....))..)))))).))))....))))))))))))).))))). ( -46.10) >DroWil_CAF1 15114 115 - 1 GUACUGA--U---CUCUAUUAGGCAUUGCUCUGGAUGGCCAUUUGAAGGAUGAGGAUGUCAAUUUGGCUUCCUCAACCAUGGUCCAAGAGGGCAAAUCGACUGGCGAUGCUUGCGGUAUU ((.((((--(---....)))))))(((((...(.((.((((.((((.((.((((((.(((.....))).)))))).))...((((....))))...)))).)))).)).)..)))))... ( -39.80) >DroMoj_CAF1 10835 112 - 1 ----CAUAC----ACUCCUCAGGUAUCGCUCUGGAUGGCCAUUUGAAGGAUGAGGAUGUCAACUUGGCUUCCUCCACCAUGGUCCAGGAGGGCAAGUCCACGGGCGAUGCUUGCGGUAUU ----.....----...((.(((((((((((((((((.(((.(((...(((((((((.(((.....))).))))).......)))).))).)))..))))).)))))))))))).)).... ( -46.61) >DroAna_CAF1 9995 120 - 1 UUUUUAAUUCCUCUCCUCUUAGGUAUUGCUUUGGAUGGGCAUUUAAAGGAUGAGGACGUCAACCUGGCCUCCUCCACCAUGGUCCAGGAGGGCAAGUCCACGGGCGAUGCCUGUGGUAUC ........(((((((((.(((((...(((((.....)))))))))))))).))))).(((..(((((((...........)).)))))..)))....((((((((...)))))))).... ( -43.90) >consensus U_U_UAAAU____CCUUCUCAGGCAUCGCUCUGGAUGGCCAUUUGAAGGAUGAGGAUGUCAACCUGGCCUCCUCCACCAUGGUCCAGGAGGGCAAGUCCACGGGCGAUGCCUGCGGUAUU ................((.((((((((((((..((((..((((.....))))....))))....((.((((((..((....))..)))))).)).......)))))))))))).)).... (-32.06 = -31.87 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:04 2006