Locus 2996

Sequence ID 3L_DroMel_CAF1
Location 8,613,278 – 8,613,368
Length 90
Max. P 0.800061
window4679

overview

Window 9

Location 8,613,278 – 8,613,368
Length 90
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -18.88
Consensus MFE -9.20
Energy contribution -8.84
Covariance contribution -0.36
Combinations/Pair 1.20
Mean z-score -2.22
Structure conservation index 0.49
SVM decision value 0.61
SVM RNA-class probability 0.800061
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8613278 90 - 23771897
UGAAAUAAAG-------CAAAAUAGUACACAAUCGAAAGAAAAACCAACCACAUUU---------GUGGCUUACUUAGCCGUGAAGUGAAAGUACAUUAUGUGUUG
.........(-------((.(((.((((....((....)).........(((.((.---------.(((((.....)))))..)))))...))))))).))).... ( -22.10)
>DroSec_CAF1 1851 90 - 1
UGAAAUAAAG-------CAAAACAGUACACAAUCGAAAGAAAAACCAACCACAUUU---------GUGGCUUACUUAGCCGUGAAGUGAAAGUACAUUAUGUGUUG
........((-------((.....((((....((....)).........(((.((.---------.(((((.....)))))..)))))...))))......)))). ( -21.40)
>DroEre_CAF1 3354 89 - 1
UAAAAUCAAG-------CAAAA-AGUUUACAAUUGAAAGAAAAACCAACCACAUUU---------GUGGCUUACUUAGCCGUGAAGUGAAAGUAUAUUAUGUGUUG
........((-------((...-(((.(((..((....)).........(((.((.---------.(((((.....)))))..)))))...))).)))...)))). ( -16.60)
>DroYak_CAF1 1986 83 - 1
AAAAAU-------------AAA-AGUACACAAUUGAAAGAAAAACCAACCACAUUU---------GUGGCUUACUUAGCCGUGAAGUGAAAGUACAUUAUGUGUUG
......-------------...-.((((....((....)).........(((.((.---------.(((((.....)))))..)))))...))))........... ( -16.80)
>DroAna_CAF1 1732 101 - 1
UGAAAAAAAAAACUGGCCAAAAUAAGAGAUGUAUGAAAGAAA-----AUUACAUUUGGUGUGUGUGUGGCUUACUUAGCCGUGAAGUGAAAGUACAUUAUGUGGUG
..............(((((..(((..(((((((.........-----..)))))))..))).....)))))......(((..(.((((......)))).)..))). ( -17.50)
>consensus
UGAAAUAAAG_______CAAAA_AGUACACAAUUGAAAGAAAAACCAACCACAUUU_________GUGGCUUACUUAGCCGUGAAGUGAAAGUACAUUAUGUGUUG
................................((....)).........(((((.............((((.....))))....((((......)))))))))... ( -9.20 =  -8.84 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:02 2006