| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,608,890 – 8,609,009 |
| Length | 119 |
| Max. P | 0.652559 |
| Location | 8,608,890 – 8,609,009 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.52 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -23.97 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.22 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8608890 119 - 23771897 UGUCCUCGAUGUUGUUGUUGGAGUACAGGCCAAUGGGCGAGUUGAAUUGCUUGUGGAAGACCUAAAAUCGGGGGAUAUAUGUACACAAAUGUAAGUAAAACCCAUUACAACUUACACUU ..((((((((.......((((.((.....((.(..(((((......)))))..)))...)))))).))))))))...............(((((((.............)))))))... ( -27.02) >DroSec_CAF1 8517 111 - 1 UGUCCUCGAUGUUGUUGUUGGAGUACAGGCCGAUGGGCGAGUUGAAUUGCUUGUGGAAGACCUGAAAUCGGGGGAUAUACAUAAAUAUGUAUAAGUAAAAC--------ACUUAAACUU ..((((((((.......(..(.((.....((.(..(((((......)))))..)))...)))..).)))))))).(((((((....)))))))........--------.......... ( -26.30) >DroEre_CAF1 8547 103 - 1 UGUCCUCGAUGUUGUUGUUGGAGUAUAGGCCGAUGGGCGAGUUGAAUUGCUUGUGGAAGACCUGAAAUCGAGGGACAUACAUG--UAAGUAUAACCAAAAC--------UACU------ .(((((((((.......(..(.((.....((.(..(((((......)))))..)))...)))..).))))).))))((((...--...)))).........--------....------ ( -24.30) >consensus UGUCCUCGAUGUUGUUGUUGGAGUACAGGCCGAUGGGCGAGUUGAAUUGCUUGUGGAAGACCUGAAAUCGGGGGAUAUACAUA_AUAAGUAUAAGUAAAAC________ACUUA_ACUU ..((((((((.......((((.((.....((.(..(((((......)))))..)))...)))))).)))))))).(((((........))))).......................... (-23.97 = -23.20 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:01 2006