Locus 2994

Sequence ID 3L_DroMel_CAF1
Location 8,608,678 – 8,608,785
Length 107
Max. P 0.581723
window4677

overview

Window 7

Location 8,608,678 – 8,608,785
Length 107
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 83.01
Mean single sequence MFE -30.88
Consensus MFE -22.40
Energy contribution -22.84
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value 0.10
SVM RNA-class probability 0.581723
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8608678 107 + 23771897
GGCCGACACCAUGCUGCACAAGGUGGUCGGUUCGGAAGCCGACACUGGCCGCGUAAGUACAGGGGA-----------CUUCUUAAAGUCACACCCACAUAAUGGAAAAUUACAAAAAC
(((((.((((.((.....)).))))((((((......))))))..)))))((....))...(((((-----------(((....)))))...)))....................... ( -33.60)
>DroSec_CAF1 8294 118 + 1
GGCCGACACCAUGCUGCACAAGGUGGUCGGUUCGGAAGCCGACACUGGCCGCGUAAGUACAGGGGAAGUCCCUUUAAUUACUUAAAGUCACACCUACAUAAUGGAAAAUUACAAAAAC
(((((.((((.((.....)).))))((((((......))))))..)))))...((((((.(((((....)))))....))))))........((........)).............. ( -35.20)
>DroEre_CAF1 8255 105 + 1
GGCCGACACCAUGCUGCACAAGGUUGUCGGUUCGGAAGCCGACACUGGCCGCGUGAGUACC--A-----------AAUUGCUUAAAGCCGCACUUGGAUAAUGUUAAAUUACAGAAAA
(((((..(((.((.....)).)))(((((((......))))))).)))))((....)).((--(-----------(..(((........))).))))....(((......)))..... ( -29.50)
>DroYak_CAF1 8563 102 + 1
GGCCGACACCAUGCUGCACAAGGUUGUCGGUUCGGAAGCCGACACUGGCCGCGUAAGU-----G-----------AACUACUUAAAGCCACACUCACAUAAUGUUAAAUUACAAAAAA
(((((..(((.((.....)).)))(((((((......))))))).)))))..((.(((-----(-----------..((......))...)))).))....(((......)))..... ( -25.20)
>consensus
GGCCGACACCAUGCUGCACAAGGUGGUCGGUUCGGAAGCCGACACUGGCCGCGUAAGUACA__G___________AACUACUUAAAGCCACACCCACAUAAUGGAAAAUUACAAAAAA
(((((.((((.((.....)).))))((((((......))))))..)))))((.((((((...................))))))..)).............................. (-22.40 = -22.84 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:00 2006