| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,589,297 – 8,589,404 |
| Length | 107 |
| Max. P | 0.987337 |
| Location | 8,589,297 – 8,589,404 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.47 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -29.21 |
| Energy contribution | -28.41 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.72 |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.987337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8589297 107 + 23771897 AAUUCAAAAGGACCUCAGUCCAUACUCCCUGUCCAUAGCACGCUCCCACUCGCACAUCUAGCAGUCAGUGGCCCACUCCAGCAGUGCA---GCUGGGGUGGGUCAGA---------UGA- .........((((....))))..(((..((((...(((...((........))....)))))))..)))(((((((((((((......---)))))))))))))...---------...- ( -38.60) >DroVir_CAF1 9203 108 + 1 UCUGCACAACGAUACGAGUCCAUAUUCUCUGUCCAUAGCGCGCUCCCACUCGCACAUAUAGCAGUCAGUGGCCCACUCCGGCAGCCAAAACGCCGGGGUGGGUCAACA------------ .((((.....((((.(((........)))))))....(((.(......).))).......))))....((((((((((((((.........))))))))))))))...------------ ( -42.20) >DroPse_CAF1 14405 110 + 1 CAUCCAGAAGGACCUCAGCCCCUACUCGCUGUCCAUCGCCCGCUCCCACUCGCACAUUUAGCAGUCAGUGGCCCACUCCAGCAGCACGCAGGCUGGGGUGGGCCAGG---------UGC- ......((.((((...(((........))))))).))(((((((...(((.((.......))))).)))(((((((((((((.(....)..))))))))))))).))---------.))- ( -43.60) >DroWil_CAF1 21725 108 + 1 UAUACAAAAGGAUUUGAGCCCGUAUUCAUUGUCGAUAGCUCGCUCCCAUUCGCAUAUAUAGCAGUCAGUGGCCCAUUCCAGCAGUGCAGCAGCUGGCAUGGGU--AC---------UGG- .........((((..((((..((..((......))..))..))))..))))((.......))...(((((.(((((.(((((.(.....).))))).))))))--))---------)).- ( -32.00) >DroMoj_CAF1 7869 119 + 1 AUUGCAUAAGGACACGAGCCCCUACUCGCUGUCUAUAGCUCGCUCUCAGUCGCACAUAUAGCAGUCAGUGGCUCACUCCAGCAGCGCAGCCGCUGGCGUGGGCCAACAGGUGCACACGC- ...((.((.(((((((((......)))).))))).))))..((........)).......(((.(...((((((((.(((((.((...)).))))).))))))))...).)))......- ( -43.90) >DroAna_CAF1 12927 111 + 1 GAUCCAAAAGGAUCUAAGCCCCUAUUCCCUGUCGAUAGCCCGCUCCCACUCGCACAUCUAGCAGUCAGUGGCCCACUCCAGCAGCGCGGCAGCUGGGGUGGGUCAGC---------ACAC (((((....)))))...((.........(((.(..(((...((........))....)))...).)))((((((((((((((.((...)).))))))))))))))))---------.... ( -41.50) >consensus AAUCCAAAAGGACCUGAGCCCCUACUCCCUGUCCAUAGCCCGCUCCCACUCGCACAUAUAGCAGUCAGUGGCCCACUCCAGCAGCGCAGCAGCUGGGGUGGGUCAAC_________UGA_ .......................(((..((((.........((........)).......))))..)))(((((((((((((.........)))))))))))))................ (-29.21 = -28.41 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:55 2006