Locus 2990

Sequence ID	3L_DroMel_CAF1
Location	8,582,109 – 8,582,201
Length	92
Max. P	0.767201

overview

Window 2

Location	8,582,109 – 8,582,201
Length	92
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	83.19
Mean single sequence MFE	-18.98
Consensus MFE	-8.74
Energy contribution	-8.90
Covariance contribution	0.16
Combinations/Pair	1.08
Mean z-score	-2.81
Structure conservation index	0.46
SVM decision value	0.52
SVM RNA-class probability	0.767201
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8582109 92 + 23771897
AUUACCCAAAUUGCAAUUACAAUAGCG--AACAGCGCAUAAAUUACGAGGACAUCCUGGUAAAUGGCAAUGCCAAUGCAAUUAAAAAAUCAUUA
........(((((((.........(((--.....))).....((((.(((....))).)))).((((...)))).)))))))............ ( -21.60)
>DroSec_CAF1 6842 92 + 1
AUUACCCGAAUUGCAAUUACAAUAGCG--AACAGCGCAUAAAUUGGGAGGACAUCCUGGUAAAUGGCAAUGCCAAUCCAAUUAAAAAAUCAUUA
....(((((((((......)))).(((--.....))).....)))))(((....)))((....((((...))))..))................ ( -18.20)
>DroSim_CAF1 6878 92 + 1
AUUACCCAAAUGGCAAUUACAAUAGCG--AAAAGCGCAUAAAUUGGGAGGACAUCCUGGUAAAUGGCAAUGCCAAUGCAAUUAAGAAAUCAUUA
........(((((...........((.--....))((((..((..(((.....)))..))...((((...))))))))..........))))). ( -18.50)
>DroEre_CAF1 6592 80 + 1
AUUACCCAAAUUGCAAUUACAGUGGCG--AAAAGCGCUUAAAUUAAUAGGAAAUCCUGGUAAA------U------GCAAUUAAAAACACAUUA
........(((((((.((((...((((--.....))))........((((....)))))))).------)------))))))............ ( -17.70)
>DroYak_CAF1 7042 88 + 1
AUUACCCAAAUAGCAAUUACUAUGGCGCAAAAAGCGCAUAAAUUAAUAGGAAAUCCUGGCAAAUGGCAAU------GCUAUUAAGAAAUCAUUA
........(((((((.((.((((.((((.....)))).........((((....))))....)))).)))------))))))............ ( -18.90)
>consensus
AUUACCCAAAUUGCAAUUACAAUAGCG__AAAAGCGCAUAAAUUAAGAGGACAUCCUGGUAAAUGGCAAUGCCAAUGCAAUUAAAAAAUCAUUA
........((((((..........(((.......)))..........(((....)))...................))))))............ ( -8.74 =  -8.90 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:54 2006