Locus 2989

Sequence ID 3L_DroMel_CAF1
Location 8,581,283 – 8,581,382
Length 99
Max. P 0.937602
window4671

overview

Window 1

Location 8,581,283 – 8,581,382
Length 99
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -26.54
Consensus MFE -11.64
Energy contribution -11.88
Covariance contribution 0.24
Combinations/Pair 1.07
Mean z-score -2.48
Structure conservation index 0.44
SVM decision value 1.26
SVM RNA-class probability 0.937602
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8581283 99 + 23771897
CACACAAACAG------------ACUCACACACUCUUGCUCUAAGAUACUAAGAACACACAGCCGAGGGAAAACAACAAGCAAAUGCAGUGAGUUGCGGUGAGUGUGAGUG
(((((..((.(------------((((((...((((((((....................)).))))))..........((....)).)))))))...))..))))).... ( -25.35)
>DroSec_CAF1 6014 103 + 1
CACAUAAACACA------C--ACACUCACAUACUUUUGCUCUAAGAUACUAAGAACACACAGGCCAGGGAAAAAAACAAGCAACUGCAGUGAGUUGCGGUGAGUGUGAGUG
........(((.------(--((((((((...((((.(((.....................))).))))..........((((((......)))))).))))))))).))) ( -28.90)
>DroSim_CAF1 6030 105 + 1
CACACAAACACA------CUCUCACUCACACACUCUUGCUCUAAGAUACUAAGAACACACAGGCCAGGAAAAACAACAAGCAACUGCAGUGAGUUGCGGUGAGUGUGAGUG
..........((------(((.(((((((....(((((..((..................))..)))))..........((((((......)))))).))))))).))))) ( -31.07)
>DroEre_CAF1 5760 104 + 1
CACACAAACACAAACACACUCUCACUCU--CACUCUCGC--UUUGAUACUAAGAACA--CAGCACAGGGAAAACAACAAG-AACUGCAGUGAGUUGCGGUGAGUGUGAGUG
................(((((.(((((.--..((((.((--(.((..........))--.)))..))))...........-.(((((((....)))))))))))).))))) ( -26.90)
>DroYak_CAF1 6194 81 + 1
CACACAAACACA--------------------------C--UGUGAUACUAGGAACA--CAGCCCAGGGAAAACAACAAGCAACUGCAGUGAGUUGCGGUGAGUGUGAGCG
..((((..(((.--------------------------.--(((....((.((....--....)).))....)))....((((((......)))))).)))..)))).... ( -20.50)
>consensus
CACACAAACACA______C___CACUCACACACUCUUGCUCUAAGAUACUAAGAACACACAGCCCAGGGAAAACAACAAGCAACUGCAGUGAGUUGCGGUGAGUGUGAGUG
(((((..((..........................................................(........)..((((((......)))))).))..))))).... (-11.64 = -11.88 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:53 2006