Locus 2987

Sequence ID 3L_DroMel_CAF1
Location 8,575,100 – 8,575,190
Length 90
Max. P 0.938425
window4667 window4668

overview

Window 7

Location 8,575,100 – 8,575,190
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -21.37
Consensus MFE -13.50
Energy contribution -13.83
Covariance contribution 0.34
Combinations/Pair 1.40
Mean z-score -2.25
Structure conservation index 0.63
SVM decision value 1.27
SVM RNA-class probability 0.938425
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8575100 90 + 23771897
UGUGAAUAGCGAAAGCAGCG--UAAAAGCGUUGGAAAACCAUGGGAUAUCCAACAUUCAAAUAGUUCACGUGGUGG-UCACCAACACAAGCAA
.((((((.((....)).((.--.....))((((((...(....)....)))))).........))))))(((.(((-...))).)))...... ( -26.00)
>DroSec_CAF1 4724 90 + 1
UGUGAAAAGCGAAAGUAGCG--UAAAAACGUUGGAAAACCAUGGAAUAUCCAACUUUCAAAUAUUUCACGUGGUGG-ACACCAACACAAGCAA
.((((((...((((((((((--(....)))))((....)).(((.....))))))))).....))))))(((.(((-...))).)))...... ( -21.10)
>DroSim_CAF1 5130 90 + 1
UGUGAAAAGCGAAAGUAGCG--UAAAAACGUUGGAAAACCAUGGAAUAUCCAACUUUCAAAUAUUUCACGUGGUGG-ACACCAACACAAGCAA
.((((((...((((((((((--(....)))))((....)).(((.....))))))))).....))))))(((.(((-...))).)))...... ( -21.10)
>DroEre_CAF1 4727 90 + 1
CGUGAAAAGUGAAAGCAGCA--GUUAAGCGAUGAAUAACCAUGGGAAAUUCACCUUUCAAAUAAUUCACGUGGUGU-ACACCAACACAAGCAA
((((((...((((((..((.--.....))..(((((..((...))..))))).)))))).....))))))((((..-..)))).......... ( -18.90)
>DroYak_CAF1 4751 90 + 1
UGUGAAAAGCAAAAGCAGCG--GCGAAGCAAUGGAAAUCCAUGGGAAAUCCAUCUUUCAAAUAAUUCACGUGGUGG-ACACCAACACAAGCAA
.(((((..((....))....--..((((..(((((..(((...)))..))))).))))......)))))(((.(((-...))).)))...... ( -19.70)
>DroAna_CAF1 4755 91 + 1
CGUGAAACAUGAAGCU-GAAGCUCGAACUGUUGAAAUAAUGUAGAAU-UCCGGGUUGAAAAUAUUUCACGUGGUGCUACAACAACACGAGCAA
((((...)))).....-...(((((...(((((......(((((...-.(((.((.(((.....))))).)))..))))).)))))))))).. ( -21.40)
>consensus
UGUGAAAAGCGAAAGCAGCG__UAAAAGCGUUGGAAAACCAUGGAAUAUCCAACUUUCAAAUAUUUCACGUGGUGG_ACACCAACACAAGCAA
.((((((.((....)).............((((((...(....)....)))))).........))))))(((.((......)).)))...... (-13.50 = -13.83 +   0.34)

alignment

Postscript

secondary structure

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dotplot

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Window 8

Location 8,575,100 – 8,575,190
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -21.18
Consensus MFE -14.49
Energy contribution -13.83
Covariance contribution -0.66
Combinations/Pair 1.45
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.88
SVM RNA-class probability 0.873822
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8575100 90 - 23771897
UUGCUUGUGUUGGUGA-CCACCACGUGAACUAUUUGAAUGUUGGAUAUCCCAUGGUUUUCCAACGCUUUUA--CGCUGCUUUCGCUAUUCACA
.....((((.((((((-....(((((((((.....)...((((((...((...))...))))))...))))--)).))...))))))..)))) ( -20.90)
>DroSec_CAF1 4724 90 - 1
UUGCUUGUGUUGGUGU-CCACCACGUGAAAUAUUUGAAAGUUGGAUAUUCCAUGGUUUUCCAACGUUUUUA--CGCUACUUUCGCUUUUCACA
......(((.(((...-))).)))((((((....((((((((((.....)))(((....))).(((....)--))..)))))))..)))))). ( -20.90)
>DroSim_CAF1 5130 90 - 1
UUGCUUGUGUUGGUGU-CCACCACGUGAAAUAUUUGAAAGUUGGAUAUUCCAUGGUUUUCCAACGUUUUUA--CGCUACUUUCGCUUUUCACA
......(((.(((...-))).)))((((((....((((((((((.....)))(((....))).(((....)--))..)))))))..)))))). ( -20.90)
>DroEre_CAF1 4727 90 - 1
UUGCUUGUGUUGGUGU-ACACCACGUGAAUUAUUUGAAAGGUGAAUUUCCCAUGGUUAUUCAUCGCUUAAC--UGCUGCUUUCACUUUUCACG
..........((((..-..))))((((((.....((((((((((((..((...))..)))))))((.....--.))...)))))...)))))) ( -22.10)
>DroYak_CAF1 4751 90 - 1
UUGCUUGUGUUGGUGU-CCACCACGUGAAUUAUUUGAAAGAUGGAUUUCCCAUGGAUUUCCAUUGCUUCGC--CGCUGCUUUUGCUUUUCACA
......(((.(((...-))).)))(((((......(((.((((((..(((...)))..))))))..)))..--....((....))..))))). ( -23.40)
>DroAna_CAF1 4755 91 - 1
UUGCUCGUGUUGUUGUAGCACCACGUGAAAUAUUUUCAACCCGGA-AUUCUACAUUAUUUCAACAGUUCGAGCUUC-AGCUUCAUGUUUCACG
......(((.(((....))).)))(((((((((.........(((-((........)))))........((((...-.)))).))))))))). ( -18.90)
>consensus
UUGCUUGUGUUGGUGU_CCACCACGUGAAAUAUUUGAAAGUUGGAUAUCCCAUGGUUUUCCAACGCUUUUA__CGCUACUUUCGCUUUUCACA
......(((.(((....))).)))(((((..........((((((...(.....)...))))))((........))...........))))). (-14.49 = -13.83 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:50 2006