Locus 2986

Sequence ID 3L_DroMel_CAF1
Location 8,570,248 – 8,570,352
Length 104
Max. P 0.764342
window4666

overview

Window 6

Location 8,570,248 – 8,570,352
Length 104
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 94.74
Mean single sequence MFE -16.14
Consensus MFE -12.83
Energy contribution -13.27
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.79
Structure conservation index 0.79
SVM decision value 0.51
SVM RNA-class probability 0.764342
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8570248 104 + 23771897
CACACAACAGACACAGCUCUUUUUGCCUUUUGC------CUUUGGCUUUUGCUCAGUUGCGAACCCCAACCCAAACCCAAGAUUCUGUCUAAUGAUCCUCAAACCCUUUU
....((..(((((.......(((((...((((.------..((((..(((((......)))))..))))..))))..)))))...)))))..))................ ( -15.60)
>DroSec_CAF1 21313 104 + 1
CACACAACAUACACAGCUCUUUUUGCCUUUUGC------CUUUGGCUUUUGCUCAGUUGCGAAUCCCAACCGAAACCCAAGAUUCUGUCUAAUGAUCCUCAAACCCUUUU
.......(((..((((....(((((..(((((.------..((((..(((((......)))))..)))).)))))..)))))..))))...)))................ ( -18.00)
>DroSim_CAF1 22087 104 + 1
CACACAACAGACACAGCUCUUUUUGCCUUUUGC------CUUUGGCUUUUGCUCAGUUGCGAACCCCAACCCUAACCCAAGAUUCUGUCUAAUGAUCCUCAAACCCUUUU
....((..(((((.((.((((...((.....))------..((((..(((((......)))))..)))).........)))))).)))))..))................ ( -14.80)
>DroEre_CAF1 21973 104 + 1
CACACAACAGACACAGCUCUUUUUGCCUUUUGC------CUUUGGCUACUGCUCAGUUGCGAACCCCAACCCAAACCCAAAAUUCUGUCUAAUGAUCCUCAAACCCUUUU
....((..(((((..((.......))..(((((------..(((((....)).)))..)))))......................)))))..))................ ( -13.90)
>DroYak_CAF1 21936 110 + 1
CACACAACAGACACAGCUCUAUUUGCCUUUUGCCUUUGCCUUUGGCUUUUGCUCAGUUGCGAACCCCAACCCAAACCCAAGAUUCUGUCUAAUGAUCCUCAAACCCUUUU
....((..(((((..((.......)).(((((..((((...((((..(((((......)))))..))))..))))..)))))...)))))..))................ ( -18.40)
>consensus
CACACAACAGACACAGCUCUUUUUGCCUUUUGC______CUUUGGCUUUUGCUCAGUUGCGAACCCCAACCCAAACCCAAGAUUCUGUCUAAUGAUCCUCAAACCCUUUU
....((..(((((..((.......)).(((((.........((((..(((((......)))))..))))........)))))...)))))..))................ (-12.83 = -13.27 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:48 2006