| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,569,212 – 8,569,329 |
| Length | 117 |
| Max. P | 0.878944 |
| Location | 8,569,212 – 8,569,329 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.68 |
| Mean single sequence MFE | -41.22 |
| Consensus MFE | -27.64 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.878944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8569212 117 - 23771897 AGGAGUCUGCAUCCUUGUCCACGGAUGCGUCGUCCCUUGUGCGUUUCUUCUGGCGCCUCGGUGCCUGCGGACGGGGCUUAUUCUGUAGCUCCUGCUCCAUCUCCUCCUGAAUCAUCG (((((...((((((........))))))...(((((..((.(((.......(((((....))))).))).)))))))......((.(((....))).))....)))))......... ( -39.60) >DroPse_CAF1 21309 99 - 1 ACGAGUCCGCAUCCUUCUCAACGGAUGCAUCAUCGCGUGUGCGUUUCUUGUGGCGCCUAGGGGCCAGCGGUAGGGCC------UGU-GGUCCUGC--CUUCUC---------CAUCG (((((...((((((........)))))).....(((....)))...)))))(((.(....).)))...(((((((((------...-))))))))--).....---------..... ( -38.10) >DroGri_CAF1 19818 105 - 1 AGGAGUCCGCGUCCUUCUCCACAGAUGCAUCGUCGCGUGUGCGUUUCUUUUGGCGCCUUGGCGCCUGAGGUCGACUU------UGUGG-AGUGGG--CAACUC---CUGUGCUGCCG ((((((....((((..(((((((((.((((........))))(((.((((.(((((....))))).))))..)))))------)))))-)).)))--).))))---))......... ( -44.30) >DroSec_CAF1 20277 117 - 1 AGGAGUCCGCAUCCUUGUCCACGGAUGCGUCGUCCCUUGUGCGUUUCUUCUGGCGCCUCGGUGCCUGCGGACGGGGCUUAUUCUGUAGCUCCUGCUCCAUCUCCUCCUGAAUCAUCG (((((..(((((((........)))))))..(((((..((.(((.......(((((....))))).))).)))))))......((.(((....))).))....)))))......... ( -41.20) >DroSim_CAF1 21050 117 - 1 AGGAGUCCGCAUCCUUGUCCACGGAUGCGUCGUCCCUUGUGCGUUUCUUCUGGCGCCUCGGUGCCUGCGGACGGGGCUUAUUAUGUAGCUCCUGCUCCAUCUCCUCCUGAAUCAUCG (((((..(((((((........)))))))..(((((..((.(((.......(((((....))))).))).))))))).....(((.(((....))).)))...)))))......... ( -41.90) >DroPer_CAF1 23069 99 - 1 ACGAGUCCGCAUCCUUCUCAACGGAUGCAUCAUCGCGUGUGCGUUUCUUGUGGCGCCUCGGCGCCAGCGGUAGGGCC------UGU-GGUCCUGC--CUUCUC---------CAUUG (((((...((((((........)))))).....(((....)))...)))))(((((....)))))...(((((((((------...-))))))))--).....---------..... ( -42.20) >consensus AGGAGUCCGCAUCCUUCUCCACGGAUGCAUCGUCCCGUGUGCGUUUCUUCUGGCGCCUCGGUGCCUGCGGACGGGGC______UGUAGCUCCUGC__CAUCUC___CUGAAUCAUCG ..(((.((((............(((((((.((.....))))))))).....(((((....))))).))))..((((((........))))))........))).............. (-27.64 = -27.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:47 2006