Locus 2982

Sequence ID 3L_DroMel_CAF1
Location 8,558,322 – 8,558,421
Length 99
Max. P 0.719960
window4662

overview

Window 2

Location 8,558,322 – 8,558,421
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 74.55
Mean single sequence MFE -23.80
Consensus MFE -10.09
Energy contribution -11.02
Covariance contribution 0.93
Combinations/Pair 1.28
Mean z-score -1.86
Structure conservation index 0.42
SVM decision value 0.40
SVM RNA-class probability 0.719960
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8558322 99 + 23771897
GGCAUUGUUAUUCAAGAAGUUGUUUAGGUUGGGGAAACUUCGAAGUGAGAUAUCACUUCUGAUUUUAAUAGACAAACACUUUGG-UAACACCGAGCACAA
.((..((((((..(((...(((((((....(((....))).(((((((....))))))).........)))))))...)))..)-)))))....)).... ( -25.40)
>DroSec_CAF1 9495 99 + 1
GGCAUUGUUAUUCAAGAAGUGGUUUCGGGUUGGGAAACUUCGAAGUGAGAUAUCACUUCUGAUUUUAAUAGACUAACACUUUGG-UAACAGCGAGCACAA
.((.(((((((....(((((((((((.......)))))...(((((((....))))))).................)))))).)-))))))...)).... ( -24.80)
>DroSim_CAF1 9988 99 + 1
GGCAUUGUUAUUCAAGAAGUUGCUUAGGGUUGGGAAACUUCGAAGUGAGAUAUCACUUCUGAUUUUGAUAGGCAAACACUUUGG-UAACAGUGAGCACAA
..(((((((((..(((...(((((((.....((....))..(((((((....))))))).........)))))))...)))..)-))))))))....... ( -30.90)
>DroEre_CAF1 9829 89 + 1
GGUAUUGUUAUUCAAGAAGUUGUUUAGGGUGAGGAAAUGUAG-----------CACUUCUGGUUCUAUCAGACAAACACUUAAGUUUACACUGAGUGCCA
((((((............(((...(((..(.((((.......-----------...)))).)..)))...)))((((......))))......)))))). ( -16.70)
>DroYak_CAF1 9839 77 + 1
GGUAUUGUUAUUCAAGAAGUUCUUUGGGGUUGGGAAACUUAGAAGUGAGAUAUCACUUUUGAUCCUAAUAGACAAAC-----------------------
....(((((.((((((......))))))(((((((...((((((((((....))))))))))))))))).)))))..----------------------- ( -21.20)
>consensus
GGCAUUGUUAUUCAAGAAGUUGUUUAGGGUUGGGAAACUUCGAAGUGAGAUAUCACUUCUGAUUUUAAUAGACAAACACUUUGG_UAACACCGAGCACAA
....((((((.(((.((((((.(((......))).))))))(((((((....))))))))))...))))))............................. (-10.09 = -11.02 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:44 2006