Locus 2981

Sequence ID 3L_DroMel_CAF1
Location 8,556,064 – 8,556,162
Length 98
Max. P 0.996254
window4661

overview

Window 1

Location 8,556,064 – 8,556,162
Length 98
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -29.28
Consensus MFE -23.52
Energy contribution -23.48
Covariance contribution -0.04
Combinations/Pair 1.20
Mean z-score -2.92
Structure conservation index 0.80
SVM decision value 2.67
SVM RNA-class probability 0.996254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8556064 98 + 23771897
CGUACUUUCAUUAUUUAUGAGUGGU--GCUCGUGUUUGUGUUGUGGCACAAGUUCCUUAACUUUUGCCUCUAAGUUAAGUGCUUAGUUUGUGCCGUGAUU
.((((((((((.....))))).)))--))..........((..((((((((((..((((((((........)))))))).))).....)))))))..)). ( -28.30)
>DroSec_CAF1 7340 98 + 1
CGUACUUUCAUUAUUCAUGAGUGGU--GCUCGUGUUUGUGUUGUGGCAUAAGUUCCUUAACUCUUGCCACUAAGUUAAGUGCUCGGUUUGUGCCGUGAAU
.((((((.(((....((((((....--.))))))...)))..((((((..((((....))))..))))))......)))))).((((....))))..... ( -30.40)
>DroSim_CAF1 7803 98 + 1
CGUACUUUCAUUAUUUAUGAGUGGU--GCUCGUGUUUGUGUUGUGGCAUAAGUUCCUUAACUUUUGCCACUAAGUUAAGUGCUCGGUUUGUGCCGUGAUU
.((((((.(((....((((((....--.))))))...)))..((((((.(((((....))))).))))))......)))))).((((....))))..... ( -29.20)
>DroEre_CAF1 7652 97 + 1
CGUACUUUCAUUAUUUAUGAGUGGU--GCUCGAGCUUGUGUUGUGGCAUAGGUUCCUUAACUAUUGCCUCUA-GUUAAGUACACAGCUUGUGCCGUGAUU
.((((((((((.....))))).)))--))..((((((((((....))))))))))((((((((.......))-))))))..(((.((....)).)))... ( -30.10)
>DroYak_CAF1 7597 100 + 1
CGCACUUUCAUUAUUUAUGAGUGGUGAGCUCGUGCUUGUGUUGUGGCACAAGUUCCUUAACUUUUGCCUCUAAGUUAAGUACUUCGUUUGUGCUGUGAUU
.((((.(((((((((....)))))))))...))))....((..((((((((((..((((((((........)))))))).))).....)))))))..)). ( -28.40)
>consensus
CGUACUUUCAUUAUUUAUGAGUGGU__GCUCGUGUUUGUGUUGUGGCAUAAGUUCCUUAACUUUUGCCUCUAAGUUAAGUGCUCAGUUUGUGCCGUGAUU
........(((....(((((((.....)))))))...)))(..(((((((((((.((((((((........)))))))).....)))))))))))..).. (-23.52 = -23.48 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:43 2006