Locus 298

Sequence ID 3L_DroMel_CAF1
Location 853,166 – 853,260
Length 94
Max. P 0.719544
window448

overview

Window 8

Location 853,166 – 853,260
Length 94
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.08
Mean single sequence MFE -30.13
Consensus MFE -21.39
Energy contribution -20.70
Covariance contribution -0.69
Combinations/Pair 1.20
Mean z-score -1.44
Structure conservation index 0.71
SVM decision value 0.40
SVM RNA-class probability 0.719544
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 853166 94 + 23771897
GGCUAAUAACAU--AUACCAUUGCUUACAGGAACUCUACAAUGUCGGACUCCUCGUAUAGCGGCCGCUGGACGGCUCGCUGUGCCUCCAUGGCCAG
(((((.......--..............((((..(((........))).)))).((((((((((((.....)))).)))))))).....))))).. ( -29.70)
>DroPse_CAF1 8801 90 + 1
UACUGAU--CUG----AUGGUUUCUUGCAGCAAUUCCACCAUGUCGGAUUCCUCGUACAGUGGCCGCUGGACGGCUCGCUGUGCGUCGGUGGCUAG
(((((((--..(----(.((..(((.(((............))).)))..))))((((((((((((.....)))).)))))))))))))))..... ( -33.50)
>DroSec_CAF1 7708 94 + 1
GGCUAAUACCAU--AUACCACUGCUUACAGGAACUCCACAAUGUCGGACUCCUCGUAUAGCGGCCGCUGGACGGCUCGCUGUGCUUCCAUUGCCAG
(((.........--..............((((..(((........))).)))).((((((((((((.....)))).)))))))).......))).. ( -30.00)
>DroEre_CAF1 7646 94 + 1
AGCAUAUACCAU--GUACCAUUAUUUACAGGAACUCUACCAUGUCGGACUCCUCGUACAGCGGCCGCUGGACGGCUCGCUGUGCUUCCAUCGCCAG
.((........(--(((........))))((((.....((.....)).......((((((((((((.....)))).))))))))))))...))... ( -28.70)
>DroYak_CAF1 7883 93 + 1
AGC---UACCGUUGAUAUCAUUAUUUACAGAAACUCUACAAUGUCGGACUCCUCGUACAGCGGCCGCUGGACGGCCCGCUGUGCUUCCGUCGCCAG
.((---....((.((((....)))).))..............(.((((......((((((((((((.....))).))))))))).)))).)))... ( -27.90)
>DroPer_CAF1 8821 90 + 1
UACUGAU--CUG----AUGAUUUCUUGCAGCAAUUCCACCAUGUCGGAUUCCUCGUACAGUGGCCGCUGGACGGCUCGCUGUGCGUCGGUGGCUAG
..(((..--..(----(.....))...))).....(((((.....((...)).(((((((((((((.....)))).)))))))))..))))).... ( -31.00)
>consensus
AGCUAAUACCAU__AUACCAUUACUUACAGGAACUCCACAAUGUCGGACUCCUCGUACAGCGGCCGCUGGACGGCUCGCUGUGCUUCCAUGGCCAG
..................................(((........)))......((((((((((((.....)))).))))))))............ (-21.39 = -20.70 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:39 2006