| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,514,815 – 8,514,926 |
| Length | 111 |
| Max. P | 0.723011 |
| Location | 8,514,815 – 8,514,926 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.53 |
| Mean single sequence MFE | -31.05 |
| Consensus MFE | -19.64 |
| Energy contribution | -19.50 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.723011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8514815 111 - 23771897 ------GCUCAAUUGAGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUAAGGACCUGGUUGGGGUGACAUCUACAUGAGGGAUGCGAUGAAUCGCAAAAGGAAAAAAA-AA- ------((((....))))((((....(((((((((...((((((..((........))..))))))...)))))))))....))))...(((((....)))))............-..- ( -35.10) >DroPse_CAF1 6473 105 - 1 GCUCGAGCUCAAUUGAGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUCAGCAGCGUGAUGGGGUGACGCCACAAUGAGGGAUGGGAUA--UGG-GAUGGG----------- .(((((((((....)))))).......(((((.(((((.(((.(.((.(((((((((.(.....).))))))))))))....)))..)))))))))--)))-).....----------- ( -32.80) >DroEre_CAF1 6328 113 - 1 ------GCUCAAUUGAGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUAAGGAACUGGUUGGGGUGACAUCUACAUGAGGGAUGGGCUGAAUCGCAAGUAGGAAAAAAAAAA ------(((((.((...(((((....(((((((((...(((((...((........))...)))))...)))))))))....)))))))))))).....(....).............. ( -28.60) >DroYak_CAF1 6145 101 - 1 ------GCUCAAUUGAGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUAAGGAUCUGGUUGGGGUGACUAGAACAUGAGGGAUGAGCUGAAUCGCAAGAA------------ ------((((.....((((((....(((((....)))))...))))))(((.(((...(.(((((((.....))))))).)...))))))))))....((....)).------------ ( -27.40) >DroAna_CAF1 6161 108 - 1 ------GCUCAAUUGGGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUAAGAACCGUGAUGGGGUGACACCAACAUGAGGGAUGGGCCAAACAGCAAAAAACGAACA----- ------(((...((((.(((((..(((.(((((((.((((((((..((........))..)).))))))))))))).)))..)))).....).))))..)))............----- ( -28.70) >DroPer_CAF1 7781 106 - 1 GCUCGAGCUCAAUUGAGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUCAGCAGCGUGAUGGGGUGACGCCACAAUGAGGGAUGGGAUA--UGGGGAUGGG----------- ((((((......)))))).(((..((.(((((.(((((.(((.(.((.(((((((((.(.....).))))))))))))....)))..)))))))))--).))..))).----------- ( -33.70) >consensus ______GCUCAAUUGAGUUUCAAAUUGAUGUCACCAUUAUCGGGAGCUGUCAUCUAAGGACCGGGAUGGGGUGACACCAACAUGAGGGAUGGGAUAAAUCGCAAAAAG___________ .......((((....((((((....(((((....)))))...))))))(((((((.............))))))).......))))................................. (-19.64 = -19.50 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:29 2006