| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,512,093 – 8,512,186 |
| Length | 93 |
| Max. P | 0.563753 |
| Location | 8,512,093 – 8,512,186 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -12.23 |
| Energy contribution | -12.56 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8512093 93 + 23771897 CAAGCAUAAACUAGAAUC-----CCUGUCAGU--UGCCCAUCCCCAUCUUCAUCCUC------------CCAUCGAUGACAAUGCGGCAAAAAUGGCGCCACUUGGUCGCCA ..................-----........(--(((((((...((((.........------------.....))))...))).)))))...(((((((....)).))))) ( -20.44) >DroSec_CAF1 3249 93 + 1 UAAGCAUAAACUAGAAUC-----CCUGUCAGC--UGCCCAUCCCCACCCUCAUCCUC------------UCAUCGAUGACAAUGCGGCAAAAAUGGCGCCACUUGGUCGCCA ..................-----.......((--(((............(((((...------------.....)))))....))))).....(((((((....)).))))) ( -18.89) >DroEre_CAF1 3107 87 + 1 UAAGCAUAAACUAGAAUC-----CCUGUCAGU--UGCCCAU------CCUCAUCCUC------------CCAUUGAUGACAAUGCGGCAAAAAUGGCGCCACUUGGGCGCCA ..................-----........(--(((((((------..(((((...------------.....)))))..))).)))))...(((((((.....))))))) ( -27.60) >DroYak_CAF1 3134 93 + 1 UAAGCAUAAACUACAAUC-----CCUGUCAGU--UGCCCAUCCACAUCCUCAUCCUC------------CCACGGAUGACAAUGCGGCAAAAAUGGCGCCACUUGGUCGCCA ...(((...((((((...-----..))).)))--)))....((.(((..((((((..------------....))))))..))).))......(((((((....)).))))) ( -26.10) >DroAna_CAF1 3312 107 + 1 UAAGCAUAAACUAGAAUC-----CCUGUCAGAUUUUCCCAGCCACAGUCCCAGCCUCCAUCCCGGUCCUCCGGCGAUGACAAUGCGGCAAAAAUGGCGCCACUUGGUCGCCA ............((((((-----.......))))))....(((.((((....))...((((((((....)))).))))....)).))).....(((((((....)).))))) ( -27.90) >DroPer_CAF1 3182 93 + 1 CUAGCAUAAACUGGAAUUGCCGUCCUGUCUGA--AGCCCC----CCUCUCCACCCA-------------GCCUCGAUGAGAAUGCGGCAAAAAUGGCGCCACUUGGUCGCCA ((((......))))..(((((((.(((..((.--((....----...)).))..))-------------).(((...)))...)))))))...(((((((....)).))))) ( -24.70) >consensus UAAGCAUAAACUAGAAUC_____CCUGUCAGU__UGCCCAUCC_CAUCCUCAUCCUC____________CCAUCGAUGACAAUGCGGCAAAAAUGGCGCCACUUGGUCGCCA ...((((..................(((((..............................................)))))))))........(((((((....)).))))) (-12.23 = -12.56 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:28 2006