Locus 2972

Sequence ID 3L_DroMel_CAF1
Location 8,500,884 – 8,500,993
Length 109
Max. P 0.668380
window4645

overview

Window 5

Location 8,500,884 – 8,500,993
Length 109
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 74.73
Mean single sequence MFE -35.38
Consensus MFE -22.68
Energy contribution -23.96
Covariance contribution 1.28
Combinations/Pair 1.29
Mean z-score -1.51
Structure conservation index 0.64
SVM decision value 0.29
SVM RNA-class probability 0.668380
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8500884 109 + 23771897
-AUGGCAAGGUCAGAGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUG
-(((((.((((....)))).......((((((((..((((....))))..))))--))))))))).(((((((((((.((...((....))..)).)))))))).))).... ( -41.00)
>DroSec_CAF1 19236 109 + 1
-AUGGCAAGGUCAGAGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUG
-(((((.((((....)))).......((((((((..((((....))))..))))--))))))))).(((((((((((.((...((....))..)).)))))))).))).... ( -41.00)
>DroSim_CAF1 20641 109 + 1
-AUGGCAAGGUCAGAGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC--CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUG
-(((((.((((....)))).......((((((((..((((....))))..))))--))))))))).(((((((((((.((...((....))..)).)))))))).))).... ( -41.00)
>DroYak_CAF1 19593 105 + 1
-UUGGCAAGGUCAGAGCCUCGUCCCGUACGGAUUUGAUCCAAUCGGAUUGGAUCCCCGUAGCUGUCCAUUCGGAUUCCGAG------UUCGGUUUCGAAUCCGACGUGAUUG
-..((((((((....)))).((..((...(((((..((((....))))..))))).))..))))))(((((((((((.(((------......))))))))))).))).... ( -36.00)
>DroPer_CAF1 22549 84 + 1
AGAGUCAGAGCCAGAGCCUCGUCCCAGCCAGAUCCGUUCCGAUCCGAUCCGGAC--ACUCAUUAUACAU-------------------------AUG-CUUGGACGUGAUCG
.(..((.((((..((..((.((....)).)).)).)))).))..)((((((..(--(..(((.......-------------------------)))-..))..)).)))). ( -17.90)
>consensus
_AUGGCAAGGUCAGAGCCUCGUUCCGUACGGAUUUGAUCCAAUCGGAUUGGAUC__CGUAGCUGUCCAUUCGGAUUCCGAGACCGAGUCCGAAUCUGAAUCCGACGUGAUUG
...(((.((((....)))).))).(((.(((((((((((((((...)))))))).............((((((((((.......))))))))))..))))))))))...... (-22.68 = -23.96 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:27 2006