Locus 2971

Sequence ID 3L_DroMel_CAF1
Location 8,500,328 – 8,500,428
Length 100
Max. P 0.755153
window4644

overview

Window 4

Location 8,500,328 – 8,500,428
Length 100
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 89.05
Mean single sequence MFE -28.73
Consensus MFE -22.61
Energy contribution -22.05
Covariance contribution -0.56
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.79
SVM decision value 0.49
SVM RNA-class probability 0.755153
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8500328 100 - 23771897
ACAGAACUAUGUGGAAGGCAGCCAAAAGUGCGAAAGGAACACAUGUUGAUAUA----UGGGUCAGUGGCGAUAACAGUGACGGCUUCCAAAGGGGGUUACGCAU
....((((...((((((.(........((.(....)..)).(((((....)))----)).((((.((.......)).))))).)))))).....))))...... ( -25.30)
>DroSec_CAF1 18690 100 - 1
GCACAACUAUGUGGAAGGCAGCCAAAAGUGCGAAAGGAGCACAUGUUGAUAUA----UGGGUCAGUGGCGAUAGCAGUGACGGCUUCCAAAGGGUGUUACGCAU
((...(((...((((((.(..((....((((.......))))((((....)))----)))((((.((.(....))).))))).))))))...))).....)).. ( -29.70)
>DroSim_CAF1 20089 100 - 1
ACAGAACUAUGUGGAAGGCAGCCAAAAGUGCGAAAGGAGCACAUGUUGAUAUA----UGGGUCAGUGGCGAUAGCAGUGGCGGCUUCCAAAGGGGGUUACGCAU
....((((...((((((.(.((((...((((.......))))...(((((...----...)))))))))....((....))).)))))).....))))...... ( -29.20)
>DroYak_CAF1 19048 101 - 1
ACAUAACUAAGUGGAUGGCGGCCAAAAGUGCGAAGGAAACACAUGUUGAUAUACAUGUGGGUCAGUGGCGAUAACAGUGACGGCAACCAAAGGGGGUUGCG---
.(((......)))....((((((.....(((........(((((((......))))))).((((.((.......)).)))).))).((....)))))))).--- ( -30.70)
>consensus
ACAGAACUAUGUGGAAGGCAGCCAAAAGUGCGAAAGGAACACAUGUUGAUAUA____UGGGUCAGUGGCGAUAACAGUGACGGCUUCCAAAGGGGGUUACGCAU
......((...((((((.(..(((......(....).(((....)))..........)))((((.((.......)).))))).))))))...)).......... (-22.61 = -22.05 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:26 2006