Locus 2970

Sequence ID 3L_DroMel_CAF1
Location 8,498,384 – 8,498,489
Length 105
Max. P 0.786642
window4643

overview

Window 3

Location 8,498,384 – 8,498,489
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -37.07
Consensus MFE -26.32
Energy contribution -26.55
Covariance contribution 0.23
Combinations/Pair 1.43
Mean z-score -1.82
Structure conservation index 0.71
SVM decision value 0.57
SVM RNA-class probability 0.786642
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8498384 105 - 23771897
AAAGGUGCCGGCACUGGAGCUGGUCAAGGAACAGGGAAAUCCUGUGCUGAUCGAGUCGCUCAUUAUUUGUGACUACUUGGACGAAAAGUAUCCGGAGGUGCCAUU
...((..((....(((((((((((((.(..(((((.....))))).)))))).((((((.........))))))............))).))))).))..))... ( -35.60)
>DroSim_CAF1 16712 105 - 1
AAAGGUGCCGGCACUGGAGCUGGUCAACGAACCGGGAAAUCCUGUGCUGAUCGAGUCGCUUAUAAUUUGUGACUACCUGGACGAAAAAUAUUCGGAGUUCCCAUU
..((((..((((((.(((.(((((......)))))....))).))))))....((((((.........))))))))))(((((((.....))))....))).... ( -32.30)
>DroEre_CAF1 19442 105 - 1
AAAGGUGCCGGCACUGGAGCUGGUAAAGGAACCGGGUAAGCCUGUUCUGAUCGAGUCGCUGAUUAUUUGUGACUACCUGGAUGAGAGGUUUCCGGAGGUGCCAUU
...((..((....(((((.(((((......)))))...((((...(((.(((.((((((.........)))))).....))).)))))))))))).))..))... ( -35.50)
>DroYak_CAF1 16894 105 - 1
CGAGGUGCCGGCACUGGAGUUGGUCAAGGAGCCGGGAAAUCCUGUGCUGAUCGAGUCGCUCAUUAUUUGUGACUACCUGGACGAGAAGUAUCCGGAGGUGCCAUU
...((..((....(((((.((.(((.((((((((((....)))).))).....((((((.........)))))).))).))).)).....))))).))..))... ( -40.40)
>DroAna_CAF1 16978 105 - 1
CAAGGUGCCAGCUUUGGAGCUCGUCCGGGAACCAGGUCAUCCUGUUUUGAUCGAGUCGCUGAUCAUCUGCGACUACCUGGACGAGAAAUAUCCGGAGGUGCCGCU
...((((.((.(((((((.((((((((((.....(((((........))))).((((((.(.....).)))))).)))))))))).....))))))).)).)))) ( -49.60)
>DroPer_CAF1 20520 105 - 1
CAAGGUGCCGGCACUGGAAGUCGUCAAGGAAGGCGAGAAUUCUGUGCUAAUUGAAUCUCUAGUCAUUUGCGAUUACUUGGAUGAGAUGUAUCCGGAAGUACCGCU
...(((((.(((((.((((.(((((......)))))...))))))))).......(((.(((((......)))))...(((((.....)))))))).)))))... ( -29.00)
>consensus
AAAGGUGCCGGCACUGGAGCUGGUCAAGGAACCGGGAAAUCCUGUGCUGAUCGAGUCGCUCAUUAUUUGUGACUACCUGGACGAGAAGUAUCCGGAGGUGCCAUU
...(((((((((((.(((.(((((......)))))....))).))))).....((((((.........))))))..(((((.........))))).))))))... (-26.32 = -26.55 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:25 2006