Locus 297

Sequence ID 3L_DroMel_CAF1
Location 839,611 – 839,710
Length 99
Max. P 0.922124
window447

overview

Window 7

Location 839,611 – 839,710
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 80.57
Mean single sequence MFE -26.16
Consensus MFE -16.62
Energy contribution -16.62
Covariance contribution -0.00
Combinations/Pair 1.29
Mean z-score -2.23
Structure conservation index 0.64
SVM decision value 1.15
SVM RNA-class probability 0.922124
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 839611 99 - 23771897
ACCACAUGAAAGGAGACCUCUUUCAGAAACUGAAACUUAUGGUUUCCGAAAGGAGGUCAGCACAUAAUCAAGGUUUUUUAAGUGAAAUGAAAGGGGUUA
.((........)).(((((((((((...((((((((((.((..((((....))))..))...........)))))))...)))....))))))))))). ( -30.40)
>DroSec_CAF1 2696 95 - 1
ACCACUUGAAAGGACACCUCUUCCAGAGACUGAAACUUAUGGUUUCCGAAAGGAGGUCAGCC--UAAUGAGGGUUAUUUAAGUGAAAUGAAAGAAA--G
..((((((((..(((.((((...(((...))).......((..((((....))))..))...--....))))))).))))))))............--. ( -26.80)
>DroSim_CAF1 2699 88 - 1
ACCACUUGAAAGGACACCUCUUCCAGAGACUGAAACUUAUGGUUUCCGAAAGGAGGUCAGCC--UAA---------UUUAAGUGAAAGGAAAGGGGUUA
..(((((((((((..(((((((...((((((.........))))))....)))))))...))--)..---------))))))))............... ( -23.80)
>DroEre_CAF1 2598 97 - 1
ACCACUUGAAAGGACACCUCUUCUAGGUACUGGGAGUUGUGAUUUCCGAAAGGAGGUCAGCA--UAAUCAGGGUUAUUCAAAUGAAAGCAAAGGGGUUA
.((.(((((......((..(((((((...)))))))..))(((((((....)))))))....--...)))))(((.(((....))))))...))..... ( -27.60)
>DroYak_CAF1 2576 97 - 1
ACCACUUGACAGGACACCUCUUCCAUAGACGAGGAGUUAUGGUUUCCAAAAGGAGGUCGACA--UUAUCAGGGUUAUUUCAGUGAAAGGAAAGGGGUUA
.((.(((((...(((.((((.((....)).)))).))).((..((((....))))..))...--...)))))....((((........))))))..... ( -22.20)
>consensus
ACCACUUGAAAGGACACCUCUUCCAGAGACUGAAACUUAUGGUUUCCGAAAGGAGGUCAGCA__UAAUCAGGGUUAUUUAAGUGAAAGGAAAGGGGUUA
..((((((((.(((.......)))...............(((..(((....)))..))).................))))))))............... (-16.62 = -16.62 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006