Locus 2969

Sequence ID 3L_DroMel_CAF1
Location 8,493,728 – 8,493,846
Length 118
Max. P 0.569167
window4642

overview

Window 2

Location 8,493,728 – 8,493,846
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.51
Mean single sequence MFE -45.65
Consensus MFE -27.27
Energy contribution -26.97
Covariance contribution -0.30
Combinations/Pair 1.44
Mean z-score -1.70
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.569167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8493728 118 - 23771897
UCCAGACCGGUGCCCUGCACAAGGAUGUUUAUGAAGGCACUGGUGAUGCUGCUGAAACGUUCCAGCAGAAUCUUGUCCUGUGCCCGCUUCAAUGGGUCCUUGGGCAGCAACGGAUUCU
......(((.(((..(((.(((((((.(...(((((((((.((.(((.((((((........)))))).)))....)).)))))...))))..).))))))).)))))).)))..... ( -46.90)
>DroPse_CAF1 16116 118 - 1
UCGAGGCCAGUGCUUUGGAACAAGAUCUUCAUGAAUGCAUUGGUGACGGCACUGAAGCGCUCCAGCAGGAUCUUAUCCUCGGCCCGCUUCAGCGGGUCCUUGGGCAGAAGAGGAUUCU
(((((((....))))))).....(((((((......((.(..(((....)))..).))((.((((.(((((...))))))(((((((....)))))))..)))))....))))))).. ( -43.40)
>DroSec_CAF1 12020 118 - 1
UCCAGCCCGGUGCCCUGCAAGAGGAUCUUCAUGAAGGCACUGGUGAUGCCGCUGAAGCGCUCCAGCAGGAUCUUGUCCUGGGCCCGCCCUAAUGGGUCCUUGGGCAGCAGCGGAUUCU
......(((.((((((((..(((...(((((....(((((....).))))..)))))..)))..)))))....(((((.(((((((......)))))))..)))))))).)))..... ( -50.50)
>DroYak_CAF1 12183 118 - 1
UCCAGACCGGUGCUGUGCAACAGGAUCUUCAUGAAGGCACCGGUGAUGCCGCUGAAACGCUCCAGCAGGAUCUUGUCCUGGGCCCGCCUCAACGGAUCCUUGGGCAGUAGCGGAUUCU
......(((.((((((.((..(((((((...(((.(((.((((.(((.((((((........)))).)).....)))))))....))))))..))))))))).)))))).)))..... ( -46.70)
>DroAna_CAF1 12403 118 - 1
UCGAUAUUGGCAUUCUGGGUGAGAAUCUUCAUGAAGGCACCAGUGAUUCCACUGAAGCAUUCUACCAGGAUCUUGUCCUGGGCCUUCUUCAGGGGAUCCUUGGGCAGCAGCGGGUUCU
..((.(((.((...((..(((((....)))))..))((.((((.((((((.((((((.......(((((((...))))))).....)))))))))))).))))))....)).))))). ( -42.40)
>DroPer_CAF1 16116 118 - 1
UCGAGGCCAGUGCUGUGGAACAAGAUCUUCAUGAAUGCAUUGGUGACGGCACUGAAGCGCUCCACCAGGAUCUUAUCCUCGGCCCGCUUCAGAGGGUCCUUGGGCAGAAGAGGAUUCU
(((..((((((((.(((((........)))))....))))))))..)))..((((((((..((...(((((...))))).))..))))))))(((((((((........))))))))) ( -44.00)
>consensus
UCCAGACCGGUGCUCUGCAACAGGAUCUUCAUGAAGGCACUGGUGAUGCCACUGAAGCGCUCCAGCAGGAUCUUGUCCUGGGCCCGCUUCAACGGGUCCUUGGGCAGCAGCGGAUUCU
.....((((((((.......................))))))))......................((((((((((((.(((((((......)))))))..))))).....))))))) (-27.27 = -26.97 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:24 2006