Locus 2967

Sequence ID 3L_DroMel_CAF1
Location 8,488,462 – 8,488,576
Length 114
Max. P 0.519819
window4636

overview

Window 6

Location 8,488,462 – 8,488,576
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.24
Mean single sequence MFE -38.68
Consensus MFE -25.33
Energy contribution -26.12
Covariance contribution 0.78
Combinations/Pair 1.34
Mean z-score -1.15
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.519819
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8488462 114 - 23771897
UCAGUCGUUGGAAUCAUCUGGUGGCCAAACAGCGUCGGGAGCUGGCCAAAGAAAAGGCCGGAGGCACUGGCUCCGAUUGGAGUCUUCUGCCGCAUUUGAAAUUCCUGCAGCA------UC
...((((..(((....)))..))))......((..((((((((((((........)))))).((((..((((((....))))))...))))..........))))))..)).------.. ( -42.80)
>DroSim_CAF1 6856 114 - 1
UCAGUCGUUGGAACCAUCUGGUGGCCAAACAGCGUCGGGAGCUGGCCAAAGAAAAGGCCGGAGGCACUGGCUCCGAUUGGAGUCUUCUUCCGCAUUUGAAAUUCCUGCACCA------UC
...((..((((.(((....)))..))))...))((((((((..((((........))))(((((....((((((....))))))..)))))..........)))))).))..------.. ( -39.00)
>DroEre_CAF1 7014 114 - 1
UCAGUCGUUGGAACCAUUUGGUGGCCAAACACCGUCGGGAGCUGGCCAAAGAAAAGGCCGGAGGCACUGGCUCCGAUUGGAGCCUUCUCCCGCAUUUAAAAUUCCUGCAGCA------UC
...((.((.((((......((((......))))(.((((((((((((........)))))).......((((((....))))))..)))))))........)))).)).)).------.. ( -46.20)
>DroWil_CAF1 6858 110 - 1
CAACGCGUUGGAAUAAUUUGCGGCAAAAAGUCCGUCGUGAGCUAACCAAAGAAAAGGA---UGGCGUGGGGUCUGAUUGGAGUCUAUUGCGCAAAUUGCGUUUCCUGCAGCA------G-
....((((.(((((((((((((.(((...(.(((((.(...((......))...).))---)))).((((.(((....))).))))))))))))))))...)))).)).)).------.- ( -31.70)
>DroYak_CAF1 6912 114 - 1
UCAGUCGUUGGAACCAUUUGGUGGCCAAGCACCGUCGGGAACUGGCGAAGGAAAAGGCCGGAGGCACUGGCUCCGAUUGGAGCCUUCUGCCGCAUUUGAAAUUUCUGCAGCA------UC
((..((((..(..((...(((((......)))))...))..)..))))..))....((....((((..((((((....))))))...))))(((...........))).)).------.. ( -40.70)
>DroAna_CAF1 6787 120 - 1
UCGCACACUGGAACAAUCUUAUGACCAAACUACGUCACGAACUGGCCAAGGAAAAGGCGGGGGGCAACGGCUCCGAUUGGAAUCUCCUGCCCCAAUUGCGAUUUGUGAAGCAUAGUCAUC
..((.((..(((....)))..))...........(((((((.(((((........)))..((((((..(..(((....)))..)...)))))).....)).))))))).))......... ( -31.70)
>consensus
UCAGUCGUUGGAACCAUCUGGUGGCCAAACACCGUCGGGAGCUGGCCAAAGAAAAGGCCGGAGGCACUGGCUCCGAUUGGAGUCUUCUGCCGCAUUUGAAAUUCCUGCAGCA______UC
...((((..(((....)))..))))..........((((((((((((........)))))).((((..((((((....))))))...))))..........))))))............. (-25.33 = -26.12 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:18 2006