Locus 2966

Sequence ID 3L_DroMel_CAF1
Location 8,486,185 – 8,486,293
Length 108
Max. P 0.555916
window4635

overview

Window 5

Location 8,486,185 – 8,486,293
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.90
Mean single sequence MFE -39.20
Consensus MFE -20.94
Energy contribution -22.08
Covariance contribution 1.14
Combinations/Pair 1.41
Mean z-score -1.74
Structure conservation index 0.53
SVM decision value 0.04
SVM RNA-class probability 0.555916
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8486185 108 - 23771897
UGCUUUAAGAGUUCUCGCAAAAACAUGGUGGCAUAGGCAGCCGUGGGCAGCGAGAACUCCAGCAGGAGUGCCAUGUAAUUGGCCUCAGCUUCAGCUGGUUCUGGUGCA
((((....((((((((((.....((((((.((....)).))))))....)))))))))).)))).(((.((((......))))))).((.((((......)))).)). ( -46.40)
>DroVir_CAF1 4528 108 - 1
UGCUUAAAUAGCUCGCGCAAGAACAUUGUGGCAUAAACGGCCGUUGGCAAUGUGAACUCCAGCAGCAGGGCCGUAUACUCGCCCUCUGACUCAGCGGGUUCGGGUGUA
.(((.....)))..((((((.....)))).))....(((((((((((....(....).))))).....))))))((((((((((.(((...))).)))..))))))). ( -34.00)
>DroPse_CAF1 8530 108 - 1
UGCUUGAACAGCUCGCGCAGCAGCAUUGUGGCAUAGGCAGCCGUGGGCAAUGAGAACUCCAGCACGAGGGCCAGAUACUUGGCAUCGUCCUCAGAUGGUUCUGCGGUG
.((..((((.((((((((....)).....(((.......)))))))))..((((..(((......))).(((((....)))))......))))....)))).)).... ( -33.80)
>DroEre_CAF1 4867 108 - 1
UGUUUCAAGAGUUCCCGCAGAAACAUGGUGGCAUAGGCGGCCGUGGGCAGCGAGAACUCUAAGAGGAGUGCCAUGUAAUUGGCCUCAGCUUCAGCUGGCUCUGGUGUA
.......(((((((.(((.(...((((((.((....)).))))))..).))).))))))).(((((((.((((......)))))))(((....)))..))))...... ( -44.10)
>DroWil_CAF1 4671 108 - 1
UGUUUGAAUAAUUCUCGCAGUAACAUGGUAGCAUAGGCAGCCGUGGGCAAUGAGAAUUCCAAUAUCAGAGCCAUAUACUUGGCUUCCGCUAUCGAUGGCUCCGAGGUU
...(((...((((((((..((..((((((.((....)).)))))).))..)))))))).)))..((.(((((((.....((((....))))...))))))).)).... ( -34.50)
>DroYak_CAF1 4643 108 - 1
UGUUUCAAGAGCUCUCGCAGAAACAUGGUGGCAUAGGCGGCCGUGGGCAGCGAGAACUCCAGUAGUAGUGCCAUGUAAUUGGCAUCAGCUUCAGCUGGUUCUGGUGUA
........(((.((((((.(...((((((.((....)).))))))..).)))))).)))((.(((..((((((......))))))((((....))))...))).)).. ( -42.40)
>consensus
UGCUUCAAGAGCUCUCGCAGAAACAUGGUGGCAUAGGCAGCCGUGGGCAACGAGAACUCCAGCAGGAGUGCCAUAUAAUUGGCCUCAGCUUCAGCUGGUUCUGGUGUA
................((.....((((((.((....)).)))))).)).((.(((((..........((((((......))))))((((....))))))))).))... (-20.94 = -22.08 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:17 2006