Locus 2964

Sequence ID 3L_DroMel_CAF1
Location 8,452,549 – 8,452,653
Length 104
Max. P 0.805382
window4632

overview

Window 2

Location 8,452,549 – 8,452,653
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.95
Mean single sequence MFE -32.15
Consensus MFE -20.86
Energy contribution -21.12
Covariance contribution 0.26
Combinations/Pair 1.30
Mean z-score -1.69
Structure conservation index 0.65
SVM decision value 0.63
SVM RNA-class probability 0.805382
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8452549 104 + 23771897
UCU----U------------UUCUUUACCUCAUGUGAUCCCGUUCGUAUGAGGAUAUCACCAAUAUUGCCCAAUGCUCUAAACUUGGCUGGCAGUUGAUUGGUGGCAUGGGCAACCGCUA
...----.------------.......((((((((((......))))))))))((..(((((((((((((....(((........))).))))))..)))))))..))((....)).... ( -34.40)
>DroSec_CAF1 7855 104 + 1
UCU----C------------UUAUUUACCUCAUGUGAUCCCGUUCGUAUCAAGAUAUCACCAAUAUUGCCCAAUGCUCUAAACUUGGCUGGCAGUUGGUUGGUGGCAUGAGCCACUGCAA
...----.------------........(((((((((......))............(((((((((((((....(((........))).))))))..))))))))))))))......... ( -26.50)
>DroSim_CAF1 8211 104 + 1
UCU----C------------UUAUUUACCUCAUGUGAUCCCGUUCGUAUCAAGAUAUCACCAAUAUUGCCCAAUGCUCUAAACUUGGCUGGCAGUUGAUUGGUGGCAUGGGCCACUGCUA
...----.------------.............(((..(((((.(((((....))))(((((((((((((....(((........))).))))))..)))))))).))))).)))..... ( -25.40)
>DroWil_CAF1 5732 105 + 1
UAG----U-U----------GAACCUACCUCAUGAGCUCCUGUCCGGAUUAGGAUGUCCCCAAUAUUGCCAAGUGCACGAAACUUGGCAGGCAAUUGAUUGGUGGCAUGGGCAACUGCCA
(((----(-(----------(..((((..........(((((.......)))))((((.(((((.(((((((((.......))))))))).......))))).))))))))))))))... ( -32.90)
>DroYak_CAF1 7796 116 + 1
UUU----UUUGAAUGGCAUGUACUUUACCUCAUAUGAUCCCGUUCGUAUGAGGAUAUCACCAAUGUUCCCCAAUGCUCUAAACUUGGCUGGCAGUUGGUUGGUGGCAUGGGCCACCGCUA
...----......((((..........((((((((((......)))))))))).....(((((((((..((((..........))))..)))).))))).((((((....)))))))))) ( -39.20)
>DroAna_CAF1 5456 108 + 1
UCUAUGAC------------UUAGUUACCUCAUGGGAUCCGGUGCGUAUCAGAAUGUCUCCAAUGUUUCCCAAGGCCCGGAACUUGGCCGGAAGCUGGUUGGUGGCAUGAGCCACUGCCA
........------------..((((.((...(((((..(((.((((......))))..))...)..))))).((((........)))))).))))(((.((((((....))))))))). ( -34.50)
>consensus
UCU____C____________UUAUUUACCUCAUGUGAUCCCGUUCGUAUCAGGAUAUCACCAAUAUUGCCCAAUGCUCUAAACUUGGCUGGCAGUUGAUUGGUGGCAUGGGCCACUGCUA
............................(((((((......((((......))))..(((((((((((((....(((........))).))))))..))))))))))))))......... (-20.86 = -21.12 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:14 2006