Locus 2963

Sequence ID 3L_DroMel_CAF1
Location 8,449,956 – 8,450,076
Length 120
Max. P 0.528148
window4631

overview

Window 1

Location 8,449,956 – 8,450,076
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -56.50
Consensus MFE -39.44
Energy contribution -40.95
Covariance contribution 1.51
Combinations/Pair 1.27
Mean z-score -1.78
Structure conservation index 0.70
SVM decision value -0.01
SVM RNA-class probability 0.528148
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8449956 120 - 23771897
CUGGGGUUGGGCUGGAGCUGAAUCGCCAGCAGCCUUGCAAGAGGCCGCCAUGGUGGCUGAUAUGCUGCAGGCCACCGCACUGGCCGGUUCUAAUGCCACCAAGGAGUCAGUGCUGGCGGA
((((((((.(((....))).)))).))))..(((((....)))))(((((.(((((((...........)))))))((((((((.(((......))).(....).))))))))))))).. ( -56.10)
>DroVir_CAF1 9850 120 - 1
CUGGGGCUGGGCAGCCGCUGAAUCGCCAGCGGCUUUGCAGGAAGCCGCCAUGGUAGCGGACAUGCUGCAGGCGAAUGCGUUGGCCGGCUGUAAUGCCACCAAGGAAUCGGUGCUGGCAGA
.((.((((((.((((.((....(((((.((((((((....))))))))....((((((....)))))).)))))..)))))).)))))).)).(((((((........)))...)))).. ( -56.20)
>DroGri_CAF1 9500 120 - 1
CUGGGGCUGGGCCGGCGCUGAGUCGCCGGCAGCGCUGCAGGAGGCUGCCAUGGUGGCGGAUAUGCUACAAGCGAAUGCUUUGGCCGGCUGCAAUGCCACCAAAGAGUCCGUGCUGGCCGA
.........(((((((((...((((((((((((.((.....))))))))..))))))((((.(((.....)))....((((((..(((......))).)))))).))))))))))))).. ( -59.40)
>DroWil_CAF1 3012 120 - 1
UUGGGGUUGGGCAGGCGCCGAAUCUCCGGCAGCCUUACAAGAGGCCGCCAUGGUGGCGGAUAUGCUGCAAGCAACAGCUUUGGCCGGCUCCAAUGCCACCAAGGAGUCGGUUUUGGCUGA
..((((((.(((....))).)))).))(((.(((((....))))).)))...(..(((....)))..)......(((((..((((((((((...........))))))))))..))))). ( -57.00)
>DroMoj_CAF1 9311 120 - 1
CUGGGGCUGGGCCGCCGCCGAGUCGCCAGCGGCAUUGCAGGAGGCCGCCAUGGUGGCGGACAUGCUGCAGGCCAAUGCUCUGGCCGGCUGCAAUGCCACCAAGGAGUCGGUGCUGGCCGA
....((((.(((....))).))))((((((((((((((((..((((((..((((.((((.....))))..))))..))...))))..))))))))))(((........)))))))))... ( -64.10)
>DroAna_CAF1 2909 120 - 1
AUGGGGCUGGGCAGCCGCUGAAUCCCCCGCAGCUUUGCAGGAGGCCGCAAUGGUGGCGGAUAUGUUGCAGGCCACCGCUUUGGCAGGUUCCAAUGCCACCAAGGAGUCCGUUUUGGCCGA
....(((..(((((..((((.........)))).)))).(((..((....((((((((....((..((..((((......))))..))..)).)))))))).))..)))...)..))).. ( -46.20)
>consensus
CUGGGGCUGGGCAGCCGCUGAAUCGCCAGCAGCCUUGCAGGAGGCCGCCAUGGUGGCGGAUAUGCUGCAGGCCAAUGCUUUGGCCGGCUCCAAUGCCACCAAGGAGUCGGUGCUGGCCGA
....((((.(((....))).))))(((((((((.((((((.(..(((((.....)))))...).)))))))).....((((((..(((......))).))))))......)))))))... (-39.44 = -40.95 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:13 2006