| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,447,381 – 8,447,474 |
| Length | 93 |
| Max. P | 0.731671 |
| Location | 8,447,381 – 8,447,474 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -30.15 |
| Consensus MFE | -19.38 |
| Energy contribution | -18.55 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8447381 93 + 23771897 -UGCCCUCUACUU------CAUUGGCUCCUCCACCCACCACCGUGGGCAUAGUGGCUCCGGAUGAGCUGCCACUUAGCUCCAACUCGCUGACAGCGUCCA -.(((..(((...------...(((.....)))(((((....)))))..))).)))...((((..((((....(((((........))))))))))))). ( -26.30) >DroPse_CAF1 2663 90 + 1 -UACCUUCCACCU------CGUUGC---UUCCACCCACCACAGUGGGCAUGGUGGCCCCUGAAGAGCUGCCACUCAACUCCAGCUCGUUGACCGCGUCCA -......(((((.------...(((---..((((........))))))).)))))........((((((...........)))))).............. ( -22.60) >DroEre_CAF1 2705 93 + 1 -CGACCUCUACUU------CAUUGGCUCCUCCACCCACCACCGUGGGCAUGGUGGCUCCGGAUGAGCUGCCACUCAGCUCCAACUCGCUGACAGCGUCCA -.(((.......(------((((((..((.((((((((....)))))..))).))..)).)))))((((....(((((........)))))))))))).. ( -32.50) >DroYak_CAF1 2503 93 + 1 -UGCCCUCUACUU------CAUUGACCCCUCCACCCACCACCGUGGGCAUGGUGGCUCCGGAUGAGCUGCCACUCAGCUCCAACUCGCUGACAGCGUCGA -............------..(((((........((((....))))((.(((..((((.....))))..))).(((((........)))))..))))))) ( -29.60) >DroMoj_CAF1 5843 100 + 1 UUGGUUUCCGAUUCGCCACCGCCGACGCCGCCGCCGACCACGGUUGGUAUUGUGGCGCCGGAGGAGCUGCCGCUCAGCUCCAGCUCGUUAACUGCAUCCA ..((((..(((...((.....(((.((((((.((((((....))))))...)))))).))).(((((((.....))))))).)))))..))))....... ( -42.90) >DroPer_CAF1 2636 90 + 1 -UGCCUUCCACCU------CGUUGC---UUCCACCCACCACAGUGGGCAUGGUGGCCCCCGAAGAGCUGCCACUCAACUCCAGCUCGUUGACCGCGUCCA -.((..((.((.(------((..((---(.((((((((....)))))..))).)))...))).((((((...........)))))))).))..))..... ( -27.00) >consensus _UGCCCUCCACUU______CAUUGAC_CCUCCACCCACCACCGUGGGCAUGGUGGCUCCGGAUGAGCUGCCACUCAGCUCCAACUCGCUGACAGCGUCCA .................................(((((....)))))....(((((..(......)..)))))(((((........)))))......... (-19.38 = -18.55 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:10 2006