| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,444,763 – 8,444,856 |
| Length | 93 |
| Max. P | 0.943047 |
| Location | 8,444,763 – 8,444,856 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.94 |
| Mean single sequence MFE | -24.08 |
| Consensus MFE | -14.60 |
| Energy contribution | -13.88 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.943047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8444763 93 + 23771897 UACUCG--GGCC-------------GCGGCCGUGAGG-AACUGCUUUGUGUGAUUUUUGUGUUCAAGCGU-UUACAUUUUGUUUUCCA-CACGCACAACCACCCAACAUAC .....(--((..-------------((((((....))-..)))).(((((((.....((((...(((((.-........)))))..))-)))))))))...)))....... ( -23.80) >DroPse_CAF1 109724 108 + 1 UACUCCCUGGCCCACCCACCCCC-UGAGGCCGUGAGG-AAAUGCUUUGUGUGAUUUUUGUGUUCAAACGUUUUACAUUUUGUUUUCCA-CAAACACUCCAUAAUAUCAUCC ........((((((.........-)).))))(((.((-(((((...((((.(((.((((....)))).))).))))...)))))))))-)..................... ( -20.30) >DroGri_CAF1 43843 99 + 1 UACUCUC-GGCCAACGCCGUACCUGUUGGCCAUGAGGAAAAUGCUUUGUGUGAUUUUUGUGUUCAAACGU-UUACAUUUUGCUUUUCAACAACCACAACAA---------- ..(((..-((((((((.......))))))))..)))(((((.((...((((((..((((....))))...-))))))...)))))))..............---------- ( -28.40) >DroYak_CAF1 33337 91 + 1 UACUCG--GGCC-------------GCGGCCGUGAGG-AACUGCUUUGUGUGAUUUUUGUGUUCAAGCGU-UUACAUUUUGUUUUCCG-CACAUACAACC--CCCACAUAC .....(--((..-------------((((((....))-..)))).(((((((....(((....)))(((.-..((.....))....))-).)))))))..--)))...... ( -22.90) >DroMoj_CAF1 49774 88 + 1 UACUCAC-AGCC----------CGGCCGGCUGUGAGGAAAAUGCUUUGUGUGAUUUUUGUGUUCAAACGU-UUACAUUUUGCUUUUCAACAACAGCAGCA----------- ..(((((-((((----------.....)))))))))(((((.((...((((((..((((....))))...-))))))...))))))).............----------- ( -28.80) >DroPer_CAF1 110266 108 + 1 UACUCCCUGGCCCACCCACCCCC-UGAGGCCGUGAGG-AAAUGCUUUGUGUGAUUUUUGUGUUCAAACGUUUUACAUUUUGUUUUCCA-CAAACACUCCAUAAUAUCAUCC ........((((((.........-)).))))(((.((-(((((...((((.(((.((((....)))).))).))))...)))))))))-)..................... ( -20.30) >consensus UACUCCC_GGCC__________C__GCGGCCGUGAGG_AAAUGCUUUGUGUGAUUUUUGUGUUCAAACGU_UUACAUUUUGUUUUCCA_CAAACACAACA____A_CAU_C ..(((...((((...............))))..)))......((...((((((....(((......)))..))))))...))............................. (-14.60 = -13.88 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:09 2006