Locus 296

Sequence ID 3L_DroMel_CAF1
Location 838,653 – 838,755
Length 102
Max. P 0.655334
window446

overview

Window 6

Location 838,653 – 838,755
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.45
Mean single sequence MFE -19.50
Consensus MFE -14.24
Energy contribution -14.20
Covariance contribution -0.04
Combinations/Pair 1.07
Mean z-score -0.79
Structure conservation index 0.73
SVM decision value 0.25
SVM RNA-class probability 0.655334
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 838653 102 - 23771897
-----AAUGGUCCCAGUAAGAAAGU-------------AAGAAUAAAUCAUCCUUAAGUGUAAUGCUAUUUUUGUGAACAUAGCUGUUCGCACACUUGAGUGGUUGAGCAAUGUCAUCAA
-----....................-------------..((.....((((((((((((((............(((((((....)))))))))))))))).)).)))......))..... ( -19.60)
>DroSec_CAF1 1654 112 - 1
-----AAUGGUCACAAUAAAAAAGUGCAGAAA---CGCAAGAAUAAAUAAUCCUUCAAUCAAAUGCUAAUUUUGUGAACAUAGCUGUUCACACACUUGAGUGGUUGAGCAAUGUCAUCAA
-----..((((.(((.........(((.....---.)))........................((((.....((((((((....))))))))(((....)))....)))).))).)))). ( -21.60)
>DroSim_CAF1 1654 115 - 1
-----AAUGGUCACAGUAAAAAAGUGCAGACAAGGCGCAAGAAUAAAUACUCCUUGAAUUAAAUGCUAUUUAUGUGAACAUAGCUGUUCACACACAUGAGUGGUUGAGCAAUGUCAUCAA
-----..((((.(((.........(((...((((((....)..........)))))........((((((((((((((((....))))))))....))))))))...))).))).)))). ( -24.80)
>DroEre_CAF1 1571 88 - 1
----GAAUCGUAUAAUUUAAAA-----------------AGUA-----------UAGAUAAAAUGCUAUUUUUGUGAACAUACCUGUACGCACACUCGAGUGCUUGAGCAAUGUCAUCAA
----..................-----------------....-----------..((((...((((.....((....)).........((((......))))...)))).))))..... ( -11.70)
>DroYak_CAF1 1509 92 - 1
CAUAUCAUCGCAUAACUUGAAA-----------------AGUA-----------UAAACCCAAUGCUAUUUUUGUGAACAUAGCUGUUCGCACACUCGAGUGGUUGAGCAGUGUCAUCAA
.......(((((......(((.-----------------((((-----------(.......))))).))).))))).....((((((((..(((....)))..))))))))........ ( -19.80)
>consensus
_____AAUGGUCACAGUAAAAAAGU_____________AAGAAUAAAU__UCCUUAAAUCAAAUGCUAUUUUUGUGAACAUAGCUGUUCGCACACUUGAGUGGUUGAGCAAUGUCAUCAA
...............................................................((((.....((((((((....))))))))(((....)))....)))).......... (-14.24 = -14.20 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:37 2006