| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,439,224 – 8,439,326 |
| Length | 102 |
| Max. P | 0.516160 |
| Location | 8,439,224 – 8,439,326 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 81.38 |
| Mean single sequence MFE | -34.98 |
| Consensus MFE | -21.35 |
| Energy contribution | -21.05 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8439224 102 + 23771897 GAGAUGCAAGCUGCGGCGGCGGCAGCGGCUGCUGCUGGCAAAUACGAUAUGAAGUAUAUGAUGGAACAGCAGGGCAAGUACAAUGUGGAGUUGUCAGCUGCC .........((((((((((((((....)))))))))).((.((((........)))).))......))))..((((.(((((((.....)))))..)))))) ( -34.30) >DroVir_CAF1 48716 95 + 1 GAGAUUCAGGCAGCGGCUGCCGCUGCGGCAGCUGUGGGCAAAUACGACAUGAAGUACAUGAUCGAGCAGCAGGGCAAGUACCCGGUGGAGCUGGC------- ........(.((((..(..(((((((....((.....)).....(((((((.....)))).))).))))).(((......)))))..).)))).)------- ( -36.20) >DroGri_CAF1 38043 95 + 1 GAGAUGCAGGCAGCAGCAGCUGCGGCGGCAGCUGUUGGUAAAUACGACAUGAAGUAUAUGAUCGAACAGCAGGGCAAGUAUCCUGUGGAACUGGC------- ......(((....((((((((((....)))))))))).......(((((((.....)))).)))....((((((......))))))....)))..------- ( -30.30) >DroSec_CAF1 21140 102 + 1 GAGAUGCAAGCUGCGGCGGCGGCAGCGGCUGCUGCUGGCAAAUACGAUAUGAAGUACAUGAUGGAGCAGCAGGGCAAGUACAACGUGGAGUUGUCAGCUGCA ....((((.((((((((((((((....))))))))))(((...((..((((..((((.((.((......))...)).))))..))))..))))))))))))) ( -36.90) >DroEre_CAF1 20962 102 + 1 GAGAUGCAAGCUGCGGCGGCGGCAGCGGCUGCUGCUGGCAAAUACGAUAUGAAGUACAUGAUGGAGCAGCAGGGCAAGUACAACGUAGAGUUGUCAGCUGCC .........((((((.(((((((((...))))))))).).....((.((((.....)))).))..)))))..((((.(((((((.....)))))..)))))) ( -37.60) >DroMoj_CAF1 44091 95 + 1 GAAAUGCAGGCAGCUGCCGCUGCAGCGGCGGCCGUGGGCAAGUACGACAUGAAGUACAUGAUCGAACAGCAGGGCAAGUACCCAGUGGAGCUAGC------- ....(((..((.((((((((....)))))))).))..))).((.(((((((.....)))).))).))......((.(((.((....)).))).))------- ( -34.60) >consensus GAGAUGCAAGCAGCGGCGGCGGCAGCGGCUGCUGCUGGCAAAUACGACAUGAAGUACAUGAUCGAACAGCAGGGCAAGUACAACGUGGAGCUGGC_______ ....(((..((..((((((((((....)))))))))).((..(((........)))..))........))...))).......................... (-21.35 = -21.05 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:06 2006