Locus 2957

Sequence ID 3L_DroMel_CAF1
Location 8,438,364 – 8,438,461
Length 97
Max. P 0.711591
window4623

overview

Window 3

Location 8,438,364 – 8,438,461
Length 97
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 74.59
Mean single sequence MFE -25.40
Consensus MFE -16.38
Energy contribution -17.30
Covariance contribution 0.92
Combinations/Pair 1.32
Mean z-score -1.28
Structure conservation index 0.64
SVM decision value 0.38
SVM RNA-class probability 0.711591
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8438364 97 + 23771897
ACAGCAAGGAUAGCGCCAUCAAGAACAUGGACGAGGAGACAAACAUCCAGGCGCCUAGCAGUGCAGACAC----------UAG-----UUUGGUGGAUGGUCCUAAUCCCAA
.......((((((.((((((.......((((.(.(....)...).))))..((((.(((((((....)))----------).)-----)).)))))))))).)).))))... ( -30.10)
>DroSim_CAF1 26686 97 + 1
ACAGCAAGGAUAGCGCCAUCAAGAACAUGGACGAGGAGACUAACAUCCAGGCGCCUACCAGUGCAGAGAC----------AAG-----UUUGGUGGAUGGUCCCAAUCCUAA
......(((((.(.((((((..((((.((((..((....))....)))).((((......))))......----------..)-----)))....)))))).)..))))).. ( -28.60)
>DroEre_CAF1 20099 97 + 1
ACAGCAAGGAUAGCGCCAUCAAGAACAUGGACGAGGAGACAAACAUCCAGGCGCCAAGCAGUGCAGAGAC----------AAG-----UUUGGUGGAUGGUCCAAAUCCCAA
.......((((...((((((.......((((.(.(....)...).))))..((((((((..((......)----------).)-----)))))))))))))....))))... ( -26.80)
>DroWil_CAF1 149551 79 + 1
AUAGCAAGGACAGCGCCAUUAAGAACAUGGACGAGGAGACGAAUAUUCAGGCUCCCAAUAGUGU------------------------------GGAUGGACU---GCUUAA
......(((.(((..(((((....((((....(.((((..((....))...)))))....))))------------------------------.))))).))---)))).. ( -17.70)
>DroYak_CAF1 26975 97 + 1
ACAGCAAGGAUAGCGCCAUCAAGAACAUGGACGAGGAGACAAACAUCCAAGCGCCUAGCAGUGCCGAGAC----------UAG-----UUUGGUGGAUGGUCCAAAUCCCAA
.......((((...((((((.......((((.(.(....)...).))))..((((.((((((......))----------).)-----)).))))))))))....))))... ( -25.20)
>DroMoj_CAF1 43111 100 + 1
ACAGCAAGGAU---ACCAUCAAGAACAUGGAUGAGGAGACCAACAUCCAGGCACCCAGCAGUAUACAGCCGCUCAGUAUCAAGCCUACCCACGUGGAUGGUCU---------
...........---((((((....((..(((((.(....)...)))))((((((..(((.((.....)).)))..)).....))))......)).))))))..--------- ( -24.00)
>consensus
ACAGCAAGGAUAGCGCCAUCAAGAACAUGGACGAGGAGACAAACAUCCAGGCGCCUAGCAGUGCAGAGAC__________AAG_____UUUGGUGGAUGGUCC_AAUCCCAA
.......((((....((((((((....((((.(.(....)...).)))).((((......))))........................))))))))...))))......... (-16.38 = -17.30 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:05 2006