Locus 2956

Sequence ID 3L_DroMel_CAF1
Location 8,435,961 – 8,436,065
Length 104
Max. P 0.739798
window4622

overview

Window 2

Location 8,435,961 – 8,436,065
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 99.49
Mean single sequence MFE -29.63
Consensus MFE -28.83
Energy contribution -28.83
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.86
Structure conservation index 0.97
SVM decision value 0.45
SVM RNA-class probability 0.739798
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8435961 104 - 23771897
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGAAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....((((((((........)))))))).))))))))........................... ( -30.70)
>DroVir_CAF1 44890 104 - 1
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGUAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....(((((((..........))))))).))))))))........................... ( -29.10)
>DroGri_CAF1 34120 104 - 1
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGUAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....(((((((..........))))))).))))))))........................... ( -29.10)
>DroWil_CAF1 147004 104 - 1
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGUAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....(((((((..........))))))).))))))))........................... ( -29.10)
>DroMoj_CAF1 40303 104 - 1
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGUAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....(((((((..........))))))).))))))))........................... ( -29.10)
>DroPer_CAF1 100140 104 - 1
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGAAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....((((((((........)))))))).))))))))........................... ( -30.70)
>consensus
GAGUUAUGUACGUACAUAGACAUCGUUUACCUGGUGGCCGGGACCCACUCGUAUUUCUCCUUGAGUGGAGGCCGCCAUCACCCUUUAAAAACACGCUUCCGGUC
((.((((((....))))))...)).......((((((((.....(((((((..........))))))).))))))))........................... (-28.83 = -28.83 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:04 2006