| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,435,346 – 8,435,447 |
| Length | 101 |
| Max. P | 0.758517 |
| Location | 8,435,346 – 8,435,447 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 91.75 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -13.94 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.758517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8435346 101 + 23771897 UAAGUACAAAAUCAUAAUAACAGUUCUAAACAUAUGGAAUUGGACACAAAACAAAACGAUAAAAUCGUUGUCAGGAAUAACAAGAAGAUUAUAAAACAAAC .........((((.......((((((((......))))))))((((.........(((((...)))))))))..............))))........... ( -13.90) >DroSec_CAF1 17294 101 + 1 UAACUACAAAAUCAUAUUACCAGUUCUAAACAGAUGGAAUUGGGCACAAAGCUAAGCGAUAAAAUCGUUGUCACGAAUAACAAGAAGAUUAUAAAACAAAC .........((((......(((((((((......)))))))))((.....))..((((((...)))))).................))))........... ( -16.10) >DroSim_CAF1 23627 101 + 1 UAGCUACAAAAUCAUAUUAUCAGUUCUAAACAGAUGGAAUUGGGCACAAAGCAAAGCGAUAAAAUCGUUGUCAGGCAUAACAAGAAGAUUAUAAAACCAAC .........((((......(((((((((......))))))))).......((..((((((...)))))).....))..........))))........... ( -15.60) >consensus UAACUACAAAAUCAUAUUAACAGUUCUAAACAGAUGGAAUUGGGCACAAAGCAAAGCGAUAAAAUCGUUGUCAGGAAUAACAAGAAGAUUAUAAAACAAAC .........((((.......((((((((......))))))))((((.........(((((...)))))))))..............))))........... (-13.94 = -13.50 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:03 2006