Locus 2954

Sequence ID 3L_DroMel_CAF1
Location 8,431,206 – 8,431,307
Length 101
Max. P 0.993519
window4620

overview

Window 0

Location 8,431,206 – 8,431,307
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 96.24
Mean single sequence MFE -18.83
Consensus MFE -17.33
Energy contribution -17.89
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.92
SVM decision value 2.40
SVM RNA-class probability 0.993519
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8431206 101 + 23771897
AUUCUAGGGAGCACUUGAGUGCGUUAAUUUAAAGAUCUCAGCCAAAUGAAUCAUUAAAUACACAAAUGGGGCUAUAAAUAAAAUAAACAAAAUAGCCAUGC
...(((....((((....))))((..((((((.(((.(((......)))))).))))))..))...)))((((((................)))))).... ( -18.19)
>DroSec_CAF1 13017 101 + 1
AUUCUAGGGCGCACUUGAGUGCGUUAAUUUAAAGAUCUCAGCCAAAUGAAUCAUUAAAUACACAAAUGGGGCUAUAAAUAAAAUAAACAAAAUAGCCAUGC
...(((.(((((((....))))))).((((((.(((.(((......)))))).)))))).......)))((((((................)))))).... ( -21.99)
>DroSim_CAF1 19572 101 + 1
AUUCUAGGGCGCACUUGAGUGCGUUAAUUUAAAGAUCUCAGCCAAAUGAAUCAUUAAAUACACAAAUGGGGCUAUAAAUAAAAUAAACAAAAUAGCUAUGC
...(((.(((((((....))))))).((((((.(((.(((......)))))).)))))).......)))((((((................)))))).... ( -19.69)
>DroEre_CAF1 12923 101 + 1
AUUCUAGGGCGCACUUGAGUGCGUUAAUUUAAAGAUCUCAGCCAAAUGAAUCAAUAAAUACACAAAUUGGGCUAUAAAUAAAAUAAACAAAAUAGCUAUAC
.......(((((((....))))))).(((((..(((.(((......))))))..)))))..........((((((................)))))).... ( -17.39)
>DroYak_CAF1 19706 101 + 1
ACUCUAGGGCGCACUUGAGUGCGUUAAUUUAAAGAUCUCAGCCAAAUGAAUCAAUAAAUACACAAAUGGGGCUAUAAAUAAAAUACACAAAAUAGGCAUAC
.(((((.(((((((....))))))).(((((..(((.(((......))))))..))))).......))))).............................. ( -16.90)
>consensus
AUUCUAGGGCGCACUUGAGUGCGUUAAUUUAAAGAUCUCAGCCAAAUGAAUCAUUAAAUACACAAAUGGGGCUAUAAAUAAAAUAAACAAAAUAGCCAUGC
.......(((((((....))))))).((((((.(((.(((......)))))).))))))..........((((((................)))))).... (-17.33 = -17.89 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:02 2006