Locus 2953

Sequence ID 3L_DroMel_CAF1
Location 8,429,957 – 8,430,049
Length 92
Max. P 0.509566
window4619

overview

Window 9

Location 8,429,957 – 8,430,049
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 95.30
Mean single sequence MFE -17.00
Consensus MFE -14.14
Energy contribution -14.38
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.35
Structure conservation index 0.83
SVM decision value -0.05
SVM RNA-class probability 0.509566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8429957 92 - 23771897
UCUCCUUCUUGGCAUUCCUAUUCAUGCUCCAAUCUCUGCCACACACACGGAU----ACGGACAUGGACACGGACUCCAUGGGCACUUCACUUCAUU
...(((...(((...(((..((((((.(((.((((.((.......)).))))----..)))))))))...)))..))).))).............. ( -18.70)
>DroSec_CAF1 11758 91 - 1
UCUCCUUCUUGGCAUUCCUAUUCAUGCUCCAAUCUCUGCCACACACACGGAU----ACGGACAUGGACACG-ACUCCAUGGGCACUUCACUUCAUU
..........(((((........)))))........((((.......((...----.))..((((((....-..))))))))))............ ( -17.60)
>DroSim_CAF1 18341 92 - 1
UCUCCUUCUUGGCAUUCCUAUUCAUGCUCCAAUCUCUGCCACACACACGGAU----ACGGACAUGGACACGGACUCCAUGGGCACUUCACUUCAUU
...(((...(((...(((..((((((.(((.((((.((.......)).))))----..)))))))))...)))..))).))).............. ( -18.70)
>DroEre_CAF1 11711 92 - 1
UUUCCUUCUUGGCAUUCCUAUUCAUGCUCCAAUCUCUGCCACACACACGGAU----ACCGACAUGGACACGGACUUCAUGGGCACUUCACUUCAUU
..........(((((........)))))........((((.......(((..----.))).((((((.......))))))))))............ ( -14.80)
>DroYak_CAF1 18449 96 - 1
UUUCCUUCUUGGCAUUCCUAUUCAUGCUCCAAUCUCUGCCACACACACGCUUGCCGACCGACAUGGACACGGACUCCAUGGGCACUUCACUUCAUU
..........(((((........)))))........((((.......((.....)).....((((((.......))))))))))............ ( -15.20)
>consensus
UCUCCUUCUUGGCAUUCCUAUUCAUGCUCCAAUCUCUGCCACACACACGGAU____ACGGACAUGGACACGGACUCCAUGGGCACUUCACUUCAUU
..........(((((........)))))........((((.......((........))..((((((.......))))))))))............ (-14.14 = -14.38 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:01 2006