Locus 2951

Sequence ID 3L_DroMel_CAF1
Location 8,423,915 – 8,424,025
Length 110
Max. P 0.690233
window4616

overview

Window 6

Location 8,423,915 – 8,424,025
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -33.58
Consensus MFE -22.10
Energy contribution -21.28
Covariance contribution -0.83
Combinations/Pair 1.29
Mean z-score -1.71
Structure conservation index 0.66
SVM decision value 0.33
SVM RNA-class probability 0.690233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8423915 110 - 23771897
CGCGGAAUUUUCAGCCACACGGCGCAGCCAGCGUGGUUGCGAAUGUUUUCGCCAGCAAAUUACAAUAAUUGGCUGGCCAAGAUGCGUGCUUUUUGUUAAAAAUCGCCACU
.((((((..(((.(((....)))((((((.....)))))))))...))))((((((.(((((...))))).))))))......))((((..(((.....)))..).))). ( -35.50)
>DroPse_CAF1 88836 110 - 1
CACGCGUAUUCCAGCCACACGGGACAGCCACCGUUGCUGUAAGUGUUUUAGCACUAUAAUUUUAAUUAGUUUUGGGCUAAAAUGCGUGGUUUUUGUUCGUAAUCGCUGCU
...(((.((...((((((.....(((((.......)))))..((((((((((.(((.((((......)))).)))))))))))))))))))...)).))).......... ( -30.80)
>DroSim_CAF1 12362 110 - 1
CGCGGAUUUUCCAGCCACACGCCGCAGCCAGCGUCGUUGCGAAUGUUUUCGCCAGCAAAUUGCAAUAAUUGGCUGGCCAAGAUGCGUGCUUUUUGUUAAAAAUCGCCACU
.((((.((((.(((...(((((((((((.......))))))...(((((.((((((.(((((...))))).)))))).))))))))))....)))..)))).)))).... ( -33.80)
>DroEre_CAF1 5974 110 - 1
CGCGGAUUUUCCAACCACACGCCGCAGCCAGCGUCGUUGCGAAUGUUUUCGCCAGCAAUUUGCAAUAAUUGGCUGGCCAAGAUGCGUGCUUUUUGUUAAAAAUCGCCACU
.((((.((((.(((...(((((((((((.......))))))...(((((.((((((((((......)))).)))))).))))))))))....)))..)))).)))).... ( -34.10)
>DroYak_CAF1 12663 110 - 1
CGCGGAUUUUCCAGCCACACGCUGCAGCCAGCGUCGUUGCGAAUGUUUUCGCCAGCAAUUUGCAAUAAUUGGCUGGCCAAGAUGCGUGCUUUUUGUUAAAAAUCGCCACU
((((.((((((((((((.((((((....)))))).((((((((((((......))).)))))))))...)))))))..))))).))))...................... ( -36.50)
>DroPer_CAF1 89273 110 - 1
CACGCGUAUUCCAGCCACACGGGACAGCCACCGUUGCUGUAAGUGUUUUAGCACUAUAAUUUUAAUUAGUUUUGGGCUAAAAUGCGUGGUUUUUGUUCGUAAUCGCUGCU
...(((.((...((((((.....(((((.......)))))..((((((((((.(((.((((......)))).)))))))))))))))))))...)).))).......... ( -30.80)
>consensus
CGCGGAUUUUCCAGCCACACGCCGCAGCCAGCGUCGUUGCGAAUGUUUUCGCCAGCAAAUUGCAAUAAUUGGCUGGCCAAGAUGCGUGCUUUUUGUUAAAAAUCGCCACU
.((((.(((..(((...((((.((((((.......))))))...(((((.((((((...............)))))).))))).))))....)))...))).)))).... (-22.10 = -21.28 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006