| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 835,462 – 835,571 |
| Length | 109 |
| Max. P | 0.699963 |
| Location | 835,462 – 835,571 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -35.62 |
| Consensus MFE | -22.39 |
| Energy contribution | -22.95 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 835462 109 + 23771897 UGACUGAUAAAUA--CCA-UCGCAGACCUACUUCUACACGCCAUUCACCAAACUGGGAUUGGUGCCAGAGGGCGGUUCCUCCUAUAUGCUGCCCCUCAUCUUGGGGCGCUCA .............--...-..((.((((..(((((...(((((.((.((.....)))).)))))..)))))..)))).............(((((.......)))))))... ( -33.40) >DroVir_CAF1 2695 111 + 1 UAACCAGUUGCUGCUUCUU-UUCAGGCCUAUUUCCUGACACCCUUCAGCAAACUGGGUCUUGUGCCAGAGGCCUGCUCCAGCUUUAUGUUCCCACUGAUCAUGGGUCGAUCA ...((((((((((......-.(((((.......))))).......)))).))))))(.((..((.(((.((...((...........))..)).)))..))..)).)..... ( -28.84) >DroSec_CAF1 2507 109 + 1 UGACUAAUAAAUA--CCA-UCCCAGACCUACUUCUACACGCCAUUCACCAAGCUGGGAUUGGUGCCAGAGGGCGGCUCCUCCUACAUGCUGCCCCUGAUCCUGGGGCGCUCC .............--...-((((((.............(((((.((.((.....)))).))))).(((.(((((((...........))))))))))...))))))...... ( -37.20) >DroSim_CAF1 2735 109 + 1 UGAAUAAUAAAUA--CCG-UCCCAGACCUACUUCUACACGCCAUUCACCAAGCUGGGAUUGGUGCCAGAGGGCGGCUCCUCCUACAUGCUGCCCCUGAUCCUGGGGCGCUCC .............--.((-((((((.............(((((.((.((.....)))).))))).(((.(((((((...........))))))))))...)))))))).... ( -42.50) >DroEre_CAF1 2524 108 + 1 UGACCAGUGAACA---CA-UUCUAGGCCUACUUCUACACGCCAUUCACCAAGCUGGGCCUGGUGCCAGAGGGCGGUUCCUCCUAUAUGCUGCCCCUGAUCCUGGGGCGCUCC ...((((.((...---..-..((((((((((((................))).)))))))))...(((.(((((((...........)))))))))).))))))........ ( -35.99) >DroYak_CAF1 2654 109 + 1 UGACUAGUGGAUA--CCA-UCCUAGACCUACUUCUACACGCCGUUCACCAAGCUGGGUCUGGUGCCCGAGGGCGGCUCCUCCUACAUGCUGCCCCUGAUCCUGGGCCGCUCC .....(((((...--(((-..((((((((((((..((.....)).....))).)))))))))....((.(((((((...........))))))).))....))).))))).. ( -35.80) >consensus UGACUAAUAAAUA__CCA_UCCCAGACCUACUUCUACACGCCAUUCACCAAGCUGGGACUGGUGCCAGAGGGCGGCUCCUCCUACAUGCUGCCCCUGAUCCUGGGGCGCUCC ....................(((((.............(((((....((.....))...))))).(((.(((((((...........))))))))))...)))))....... (-22.39 = -22.95 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:36 2006