| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,421,589 – 8,421,682 |
| Length | 93 |
| Max. P | 0.884598 |
| Location | 8,421,589 – 8,421,682 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 81.36 |
| Mean single sequence MFE | -39.97 |
| Consensus MFE | -26.13 |
| Energy contribution | -27.13 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8421589 93 + 23771897 UUGUGGGCGUUGGAUGGCCACCCGGGAGCGGAGGCGUGGCAAUAGCAUCCCCAGCAUUGCUACCUCAUGCAACAAAAACAACGUGCCCGCAGG ((((((((((((.((((((..(((....))).)))((((((((.((.......))))))))))..))).))))....((...)))))))))). ( -39.60) >DroSec_CAF1 3428 93 + 1 UUGUGGGCGUUGGGUGGCCAACCGGGAGCGGGGGCGUGGCAAGCGCAGCCCCAACUGUGCUCCCUCAUGCAACAAAAACAACGUGCCCGCAGG (((((((((((((((.....)))((((((((((((...((....)).))))).....)))))))..............))))..)))))))). ( -44.50) >DroSim_CAF1 9972 77 + 1 UUGUGGGCGUUGGGU------------GCGGGGGCGUGGCA----CAGCCCCCACGGUGCUCCCUCAUGCAACAAAAACAACGUGCCCGCAGG ((((((((((((.((------------(.((((((((((..----......))))...)))))).))).))))....((...)))))))))). ( -35.80) >consensus UUGUGGGCGUUGGGUGGCCA_CCGGGAGCGGGGGCGUGGCAA__GCAGCCCCAACAGUGCUCCCUCAUGCAACAAAAACAACGUGCCCGCAGG ((((((((((((..................(((((...((....)).))))).....(((........))).......))))..)))))))). (-26.13 = -27.13 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:55 2006