| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,414,830 – 8,414,949 |
| Length | 119 |
| Max. P | 0.671218 |
| Location | 8,414,830 – 8,414,949 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.77 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -19.85 |
| Energy contribution | -19.85 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8414830 119 - 23771897 GCAAAACCUACACUUGGAAAAACGCUAAAUAAAUCCCA-AAUUCCUCAUUAUUUUUCCUGAAAAGCUUUAAUUUAAUUACGAAUUUUUUGUUGUUAAGUCAGAGUGAAUUCAAUUUGCUA (((((..........(((((((................-............)))))))((((..(((((.(((((((.((((.....)))).))))))).)))))...)))).))))).. ( -19.89) >DroSim_CAF1 3331 119 - 1 GCAAAAACCACACUUGGAAAAACGCUAAAUAAAUCCCA-AAUUCCUCAUUAUUUUUCCUGAAAAGCUUUAAUUUAAUUACGAAUUUUUUGUUGUUAAGUCAGAGUGAAUUCAAUUUGCUA (((((..........(((((((................-............)))))))((((..(((((.(((((((.((((.....)))).))))))).)))))...)))).))))).. ( -19.89) >DroYak_CAF1 3349 120 - 1 GCAAAAAAUACACUUGGAAAAACGCUAAAUAAAUCCCAAAAUUCCUCAUUAUUUUUCCUGAAAAGCUUUAAUUUAAUUACGAAUUUUUUGUUGUUAAGUCAGAGUGAAUUCAAUUUGCUA (((((..........(((((((.............................)))))))((((..(((((.(((((((.((((.....)))).))))))).)))))...)))).))))).. ( -19.85) >consensus GCAAAAACUACACUUGGAAAAACGCUAAAUAAAUCCCA_AAUUCCUCAUUAUUUUUCCUGAAAAGCUUUAAUUUAAUUACGAAUUUUUUGUUGUUAAGUCAGAGUGAAUUCAAUUUGCUA (((((..........(((((((.............................)))))))((((..(((((.(((((((.((((.....)))).))))))).)))))...)))).))))).. (-19.85 = -19.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:54 2006