| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,413,468 – 8,413,564 |
| Length | 96 |
| Max. P | 0.584885 |
| Location | 8,413,468 – 8,413,564 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 93.84 |
| Mean single sequence MFE | -10.20 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8413468 96 - 23771897 AACAUAGUAAAUGAGCGAGGAUAACUUUACAUAACGGGUGUCCUAUAUCUAUUAUAUACAUAUAUAAAAACAAAAACA--AAAAAACAUUAAAACUCA ...........((((..((((((.(((........))))))))).......((((((....))))))...........--..............)))) ( -10.20) >DroSim_CAF1 1965 90 - 1 AACAUAGUAAAUGAGCGAGGAUAACUUUACAUAACGGGUGUCCUAUAUCUAUUAUAUACAUAUAUAAAAAC------A--AAAAAACAUUAAAACUCA ...........((((..((((((.(((........))))))))).......((((((....))))))....------.--..............)))) ( -10.20) >DroYak_CAF1 1993 98 - 1 AACAUAGUAAAUGAGCGAGGAUAACUUUACAUAACGGGUGUCCUAUAUCUAUUAUAUACAUAUAUAAAAACAAAAACAACAAAAAACCUUAAAACUCA ...........((((..((((((.(((........))))))))).......((((((....))))))...........................)))) ( -10.20) >consensus AACAUAGUAAAUGAGCGAGGAUAACUUUACAUAACGGGUGUCCUAUAUCUAUUAUAUACAUAUAUAAAAACAAAAACA__AAAAAACAUUAAAACUCA ...........((((..((((((.(((........))))))))).......((((((....))))))...........................)))) (-10.20 = -10.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:53 2006