Locus 2945

Sequence ID 3L_DroMel_CAF1
Location 8,411,544 – 8,411,650
Length 106
Max. P 0.541522
window4607

overview

Window 7

Location 8,411,544 – 8,411,650
Length 106
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 93.71
Mean single sequence MFE -37.50
Consensus MFE -34.12
Energy contribution -33.23
Covariance contribution -0.88
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.541522
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8411544 106 + 23771897
CGAGGAGCCACUGCCGGCACCGUUGGUCAGAACGCUGUUAGACUGGAAUACCCCGAUUUGAGGAGGAUUCUGGAUGACAUCGUUAACCUCGUUGGCAUCGAACAUU
(((...((((((((((((...))))).)))((((.(((((..(..((((.((((.......)).))))))..).))))).))))........)))).)))...... ( -34.80)
>DroSim_CAF1 29 106 + 1
CGAGGAGCCACUGCCGGCUCCGUUGGUCAGAACGCUGUUAGACUGGAAUACUCCGAUUUGAGGAGGAUUCUGGAUGACAUCGUUAACCUCGUUGGCAUCGAACAUU
(((((((((......))))))((..(..((((((.(((((..(..((((.((((.......)))).))))..).))))).))))...))..)..)).)))...... ( -39.70)
>DroYak_CAF1 29 106 + 1
GGACGAGCCACUGCCAGCUCCGUUGGUCAGAACGCUGUUAGACUGGAACACCCCGAUUUGGGGAGGGUUCUGGAUGACAUCGUUUACCUCGUUGGCAUCAAACAUU
.((((((...((((((((...))))).)))((((.(((((..(..((((.((((.....))))...))))..).))))).))))...))))))............. ( -38.00)
>consensus
CGAGGAGCCACUGCCGGCUCCGUUGGUCAGAACGCUGUUAGACUGGAAUACCCCGAUUUGAGGAGGAUUCUGGAUGACAUCGUUAACCUCGUUGGCAUCGAACAUU
....((((((((((((((...))))).)))((((.(((((..(..((((.((((.......)).))))))..).))))).))))........)))).))....... (-34.12 = -33.23 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:50 2006