Locus 2942

Sequence ID 3L_DroMel_CAF1
Location 8,399,203 – 8,399,321
Length 118
Max. P 0.991062
window4603

overview

Window 3

Location 8,399,203 – 8,399,321
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 93.16
Mean single sequence MFE -37.14
Consensus MFE -34.75
Energy contribution -35.30
Covariance contribution 0.55
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.94
SVM decision value 2.25
SVM RNA-class probability 0.991062
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8399203 118 - 23771897
GGAAAGCAGCGAUGGGAAAAUCUUUGGCUGCGAUUGCACACGGGUUCCACUGCCUCUCGUCGCCAUCUUUUCUCUCUGCCGCUGCGCUGCCGACUGCGCUGCCUCUGCUUCCUCUUCU
((((.((((((..(((((((....((((.((((..(((....(....)..)))...)))).))))..)))))))..))).((.((((........)))).))...)))))))...... ( -39.10)
>DroSec_CAF1 6451 105 - 1
GGA-AGCAGCGAUGGGAAAAUCUUUGGCUGCGAUUGCACACGGGUUCCACUGCCUCUCGUCGCCAUCUUUUCUCUCUGCCGCUGC------------GCUGCCUCUGCUUCCUCUUCU
(((-(((((.((.(((((((....((((.((((..(((....(....)..)))...)))).))))..))))))))).((.((...------------)).))..))))))))...... ( -34.30)
>DroSim_CAF1 6486 118 - 1
GGAAAGCAGCGAUGGGAAAAUCUUUGGCUGCGAUUGCACACGGGUUCCACUGCCUCUCGUCGCCAUCUUUUCUCUCUGCCGCUGCGCUGCUGACUGCGCUGCCUCUGCUUCCUCUUCU
((((.((((((..(((((((....((((.((((..(((....(....)..)))...)))).))))..)))))))..))).((.((((........)))).))...)))))))...... ( -39.10)
>DroEre_CAF1 4358 118 - 1
GGAAAGCAGCGAUGGGAAAAUCUUUGGCUGCGAUUGCACACGGGUUCCACUGCCUCUCGUCGCCAUCUUUUCUCUCUGCCGCUGCGCUGCCGACUGCGCUGCCUCUGCUUCCUCUUCU
((((.((((((..(((((((....((((.((((..(((....(....)..)))...)))).))))..)))))))..))).((.((((........)))).))...)))))))...... ( -39.10)
>DroYak_CAF1 4607 106 - 1
GGAAAGCAGCGAUGGGAAAAUCUUUGGCUGCGAUUGCACACGGGUUCCACUGCCUCUCGUCGCCAUCUUUUCUCUCUGCCGCUGCG------------CUGCCUCUGCUUCCUCUUCU
((((.((((((..(((((((....((((.((((..(((....(....)..)))...)))).))))..))))))).....))))))(------------(.......))))))...... ( -34.10)
>consensus
GGAAAGCAGCGAUGGGAAAAUCUUUGGCUGCGAUUGCACACGGGUUCCACUGCCUCUCGUCGCCAUCUUUUCUCUCUGCCGCUGCGCUGC_GACUGCGCUGCCUCUGCUUCCUCUUCU
(((.(((((((..(((((((....((((.((((..(((....(....)..)))...)))).))))..)))))))..))).((.((((........)))).))...)))))))...... (-34.75 = -35.30 +   0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006