Locus 2940

Sequence ID 3L_DroMel_CAF1
Location 8,397,050 – 8,397,150
Length 100
Max. P 0.797881
window4597

overview

Window 7

Location 8,397,050 – 8,397,150
Length 100
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -25.27
Consensus MFE -17.80
Energy contribution -17.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.70
SVM decision value 0.61
SVM RNA-class probability 0.797881
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8397050 100 - 23771897
AGCUAAACUAUGCCAAAA----------------UCAAAUAUUUUUGUGUGAAUGCAUUAGUAAACAUGCACCUUAAAUUGGCAUCAGGACACUGUGCAAGGUGAUAGUAGGCUAU
((((..((((((((....----------------...........((((((..(((....)))..))))))..........(((.(((....))))))..))).))))).)))).. ( -22.80)
>DroSec_CAF1 4305 113 - 1
ACCUAAACUAUGCCAAAAAUGCACAAUAAAAUCUUUAAAUAUUUUUGAGUGAAUGCAUA-GUAGGCA--CACCUUAAUUUGGCAUCAGGACACUGUGCAAGGUGAUAGUAGGCUAU
.(((..((((((((.(..(((((((..(((((........)))))....))..))))).-.).))).--((((((......(((.(((....)))))))))))))))))))).... ( -26.30)
>DroSim_CAF1 4278 114 - 1
AGCGAAACUAUGCCAAAAAGUCACAAUAAAAUCUUAAAAUAUUUUUAAGUGAAUGCAUAAGUAGGCA--CACCUUAAAUUGGCAUCAGGACACUGUGCAAGGUGAUAGUAGGCUAU
(((...((((((((......((((...(((((........)))))...)))).(((....)))))).--((((((......(((.(((....)))))))))))))))))..))).. ( -26.70)
>consensus
AGCUAAACUAUGCCAAAAA__CACAAUAAAAUCUUAAAAUAUUUUUGAGUGAAUGCAUAAGUAGGCA__CACCUUAAAUUGGCAUCAGGACACUGUGCAAGGUGAUAGUAGGCUAU
...........(((...................................((..(((....)))..))..((((((......(((.(((....))))))))))))......)))... (-17.80 = -17.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:41 2006