Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 834,164 – 834,299 |
Length | 135 |
Max. P | 0.628715 |
Location | 834,164 – 834,272 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 84.26 |
Mean single sequence MFE | -43.99 |
Consensus MFE | -29.33 |
Energy contribution | -30.92 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.28 |
Mean z-score | -2.56 |
Structure conservation index | 0.67 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 834164 108 + 23771897 GACUC------CACGCCUGCAGAGGCGGCACGUCUGCAGCAGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGCUCUGCAGCAGGAGUUGCAGAAGCGAACCACCAAGUGCAGC .....------..(((((....)))))((((.((((((((..(.((.(((((((.((((((......))))))))))))))).)..))))))))...(......)..))))... ( -46.00) >DroSec_CAF1 1246 105 + 1 GACUC------CACGCCUGCAGAGGCGACACGUCUGCAGCAGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGCUCUGCAGCAGGAGCUGCAAAAGCGAAC---CAAGUGCAGC ...((------(..(((((((((.(.....).)))))))..)).((.(((((((.((((((......))))))))))))))).)))((((((.........---....)))))) ( -44.92) >DroSim_CAF1 1443 105 + 1 GACUC------CACGCCUGCAGAGGCGGCACGUCUGCAGCAGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGGCCUGCAGCAGGAGCUGCAAAAGCGAAC---CAAGUGCAGC .....------..(((((....)))))((((.((((((((....)).))))))((((((((......))))))((.((((((....))))))...))...)---)..))))... ( -42.70) >DroEre_CAF1 1245 105 + 1 GACUC------CACUCCUGCAGAGGCGGCACGUCUGCAGCAGCAGCAUGCAGAGGCGCUGGACAAAAUAAGAGCUCUGCAGCAGGAGCUGCAGAAGCGGAC---CAAGUGCAGC .....------.....(((((..((((((.(.((((((((....)).)))))).).))))............((((((((((....))))))).)))...)---)...))))). ( -43.60) >DroYak_CAF1 1146 105 + 1 GACUC------CGCACCUCCAGAGGCGACACGCCUGCAGCAGCAGCAUGCCGAGGCGCUGGAGAAGAUUAGCGCUUUGCAGCAGGAGCUGCAAAAGCGGAC---GAAGUGCAGC .....------.((((((((((.(....).((((((((((....)).)))..)))))))))))........(((((((((((....))))).))))))...---...))))... ( -44.70) >DroPer_CAF1 1262 111 + 1 GACUCUUCGGCCACACCUUCAGACGUGGCCCAGUGGCAACAGCAGCAUGCGGAGUCUAUGCAGAAGAUUUCUGGUCUGCAGCAAGAGCUCCAGAAGCGGAG---CAAGUGCAGC ((((((.(((((((..........))))))..((.((....)).))..).))))))..((((((((....))..))))))(((...(((((......))))---)...)))... ( -42.00) >consensus GACUC______CACGCCUGCAGAGGCGGCACGUCUGCAGCAGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGCUCUGCAGCAGGAGCUGCAAAAGCGAAC___CAAGUGCAGC .............(((((....)))))((((.(((((.((....)).((((((.(((((((......)))))))))))))))))).(((.....)))..........))))... (-29.33 = -30.92 + 1.59)
Location | 834,164 – 834,272 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 84.26 |
Mean single sequence MFE | -45.68 |
Consensus MFE | -30.31 |
Energy contribution | -30.98 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.23 |
Mean z-score | -2.74 |
Structure conservation index | 0.66 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 834164 108 - 23771897 GCUGCACUUGGUGGUUCGCUUCUGCAACUCCUGCUGCAGAGCACUGAUUUUCUCCAGCGCCUCUGCAUGCUGCUGCUGCAGACGUGCCGCCUCUGCAGGCGUG------GAGUC .(((((...((((((.((..((((((.(..(.((((((((((.(((........))).).))))))).)).)..).)))))))).))))))..))))).....------..... ( -46.20) >DroSec_CAF1 1246 105 - 1 GCUGCACUUG---GUUCGCUUUUGCAGCUCCUGCUGCAGAGCACUGAUUUUCUCCAGCGCCUCUGCAUGCUGCUGCUGCAGACGUGUCGCCUCUGCAGGCGUG------GAGUC (((.(((...---...(((.((((((((..(.((((((((((.(((........))).).))))))).)).)..)))))))).)))..((((....)))))))------.))). ( -45.50) >DroSim_CAF1 1443 105 - 1 GCUGCACUUG---GUUCGCUUUUGCAGCUCCUGCUGCAGGCCACUGAUUUUCUCCAGCGCCUCUGCAUGCUGCUGCUGCAGACGUGCCGCCUCUGCAGGCGUG------GAGUC .......(..---((..(((..((((((....))))))))).))..)....(((((((((.((((((.((....)))))))).))))(((((....)))))))------))).. ( -44.90) >DroEre_CAF1 1245 105 - 1 GCUGCACUUG---GUCCGCUUCUGCAGCUCCUGCUGCAGAGCUCUUAUUUUGUCCAGCGCCUCUGCAUGCUGCUGCUGCAGACGUGCCGCCUCUGCAGGAGUG------GAGUC (((.(((...---....(((.(((((((....))))))))))..........(((.((((.((((((.((....)))))))).)))).((....)).))))))------.))). ( -45.00) >DroYak_CAF1 1146 105 - 1 GCUGCACUUC---GUCCGCUUUUGCAGCUCCUGCUGCAAAGCGCUAAUCUUCUCCAGCGCCUCGGCAUGCUGCUGCUGCAGGCGUGUCGCCUCUGGAGGUGCG------GAGUC .((((((...---...((((((.(((((....)))))))))))........((((((.(...(((((((((((....))).)))))))).).)))))))))))------).... ( -50.80) >DroPer_CAF1 1262 111 - 1 GCUGCACUUG---CUCCGCUUCUGGAGCUCUUGCUGCAGACCAGAAAUCUUCUGCAUAGACUCCGCAUGCUGCUGUUGCCACUGGGCCACGUCUGAAGGUGUGGCCGAAGAGUC ...(((...(---(((((....))))))...)))((((((..(....)..))))))..(((((.(((.((....))))).....((((((..(....)..))))))...))))) ( -41.70) >consensus GCUGCACUUG___GUCCGCUUCUGCAGCUCCUGCUGCAGAGCACUGAUUUUCUCCAGCGCCUCUGCAUGCUGCUGCUGCAGACGUGCCGCCUCUGCAGGCGUG______GAGUC ((((.............(((.(((((((....))))))))))............))))..(((.(((((((((....)))).)))))(((((....)))))........))).. (-30.31 = -30.98 + 0.67)
Location | 834,198 – 834,299 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 87.14 |
Mean single sequence MFE | -34.98 |
Consensus MFE | -26.81 |
Energy contribution | -26.46 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.35 |
Mean z-score | -2.47 |
Structure conservation index | 0.77 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 834198 101 + 23771897 AGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGCUCUGCAGCAGGAGUUGCAGAAGCGAACCACCAAGUGCAGCCAAUGCGGGGGACGCAGCAAGGUAGGU .(((((.(((((((.((((((......))))))))))))))).((..((((....)))).))......))).(((..((((.....))))....))).... ( -37.90) >DroSec_CAF1 1280 98 + 1 AGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGCUCUGCAGCAGGAGCUGCAAAAGCGAAC---CAAGUGCAGCCAAUGCGGGGGACGCAGUAAGGUAGGU .(((((.(((((((.((((((......)))))))))))))......)))))....(((..(---(...((((.....)))).))..)))............ ( -38.00) >DroSim_CAF1 1477 98 + 1 AGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGGCCUGCAGCAGGAGCUGCAAAAGCGAAC---CAAGUGCAGCCAAUGCGGGGGACGCAGUAAGGUAGGU .(((((.(((((.(.((((((......)))))).))))))......)))))....(((..(---(...((((.....)))).))..)))............ ( -35.50) >DroEre_CAF1 1279 98 + 1 AGCAGCAUGCAGAGGCGCUGGACAAAAUAAGAGCUCUGCAGCAGGAGCUGCAGAAGCGGAC---CAAGUGCAGCCAAUGCGGUGGACGCAGCAAGGUGGGU ..((.(.(((....(.((((.((.........((((((((((....))))))).)))....---...)).)))))..((((.....))))))).).))... ( -35.89) >DroYak_CAF1 1180 98 + 1 AGCAGCAUGCCGAGGCGCUGGAGAAGAUUAGCGCUUUGCAGCAGGAGCUGCAAAAGCGGAC---GAAGUGCAGCCAGUGCGGUGGACGCAGUAAGGUAGGU .(((((.((((((((((((((......)))))))))))..)))...)))))....(((..(---(..(..(.....)..)..))..)))............ ( -38.60) >DroAna_CAF1 1297 98 + 1 AACAACAUGCAGAGGCGCUGGCGAAGAUUAACGCUCUGCAACAAGAGCUCCAAAAGCGAAC---CAAGUGCAGUCAAUGUAGUGGGCGCAGUAAGGUGAGA .....(((......(((((.((..(.(((.(((((((......))))).......(((...---....))).)).))).).)).)))))......)))... ( -24.00) >consensus AGCAGCAUGCAGAGGCGCUGGAGAAAAUCAGUGCUCUGCAGCAGGAGCUGCAAAAGCGAAC___CAAGUGCAGCCAAUGCGGGGGACGCAGUAAGGUAGGU .((.((.(((((.((((((((......)))))))))))))(((...((((((................))))))...))).......)).))......... (-26.81 = -26.46 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:35 2006