Locus 2938

Sequence ID 3L_DroMel_CAF1
Location 8,395,498 – 8,395,614
Length 116
Max. P 0.758461
window4595

overview

Window 5

Location 8,395,498 – 8,395,614
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 96.42
Mean single sequence MFE -24.70
Consensus MFE -20.80
Energy contribution -21.00
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.50
SVM RNA-class probability 0.758461
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8395498 116 - 23771897
CAAAUUAAAGGCGGGCCGUGCAAAAAUCCACAAA---ACAUCAAGAAAAAGCCAUAAAGCCAAGGCGAUAAAAAAGAAAUUAUGCUCCAUUGUGCGAUUGUGUGAAAAGGUCAAGUGCC
.........(((.((((...((..(((((((((.---.............(((..........))).......((....))........))))).))))...))....))))....))) ( -21.80)
>DroSec_CAF1 2677 116 - 1
CAAAUUAAAGGCGGGCCGUGCAAAAAUCCACAAA---ACAUCAAGAAAAAGCCAUAAAGCCAAGGCGAUAAAAAAGAAAUUAUGCUCCAUUGUGCGAUUGUGUGAAAAGGUCAAGUGCC
.........(((.((((...((..(((((((((.---.............(((..........))).......((....))........))))).))))...))....))))....))) ( -21.80)
>DroSim_CAF1 2652 116 - 1
CAAAUUAAAGGCGGGCCGUGCAAAAAUCCACAAA---ACAUCAAGAAAAAGCCAUAAAGCCAAGGCGAUAAAAAAGAAAUUAUGCUCCAUUGUGCGAUUGUGUGAAAAGGUCAAGUGCC
.........(((.((((...((..(((((((((.---.............(((..........))).......((....))........))))).))))...))....))))....))) ( -21.80)
>DroEre_CAF1 683 116 - 1
CAAAUUAAAGGCGGGCCGUGCAAAAAUCCACAAA---ACAUCAAGAAAAGGCCAUAAAGCCAGGGCGAUAAAAAAGAAAUUAUGCUCCAUUGUGCGAUUGUGUGAAAAGGUCAAGUGCC
.........(((.((((...((..(((((((((.---............(((......))).((((.((((........)))))).)).))))).))))...))....))))....))) ( -27.90)
>DroYak_CAF1 745 119 - 1
CAAAUUAAAGGCGCGCCUUGCAAAAAUCCACAAAAAAACGGCAAGCAAAAGCCAUAAAGCCAGGGCGAUAAAAAAGAAAUUAUGCUCCAUUGUGCGAUUGUGUGAAAAGGUCAAGUGCC
.........((((((((((.((..(((((((((......(((........))).........((((.((((........)))))).)).))))).))))...))..)))))...))))) ( -30.20)
>consensus
CAAAUUAAAGGCGGGCCGUGCAAAAAUCCACAAA___ACAUCAAGAAAAAGCCAUAAAGCCAAGGCGAUAAAAAAGAAAUUAUGCUCCAUUGUGCGAUUGUGUGAAAAGGUCAAGUGCC
.........((((((((...((..(((((((((.................(((..........))).......((....))........))))).))))...))....))))...)))) (-20.80 = -21.00 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:39 2006