Locus 2936

Sequence ID 3L_DroMel_CAF1
Location 8,394,191 – 8,394,311
Length 120
Max. P 0.627206
window4591

overview

Window 1

Location 8,394,191 – 8,394,311
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -34.17
Consensus MFE -30.87
Energy contribution -31.53
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.90
SVM decision value 0.19
SVM RNA-class probability 0.627206
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8394191 120 + 23771897
CCGAUUCACCUUCUCCGUUUCAACACCCGGAGAAAUUAGGCGGUAAUUGAGACGGCACUCACUGGGACUUGUCCAGUCUGUCUGCAACUUUCAUUUAGCUCAAGAUCAGUUGCCGUUUUC
..........(((((((..........)))))))...((((((((((((((((((.....((((((.....))))))))))).((............))......))))))))))))).. ( -34.70)
>DroSec_CAF1 1407 120 + 1
CCGAUUCACCUUCUCCGUUUCAACACCCGGAGAAAUUAGGCGGUAAUUGAGACGGCACUCACUGGGACUUGUCCCGUCUGUCUGCAACUUUCAUUUAGCUCAAGAUCAGUUGCCGUUUUC
..........(((((((..........)))))))...((((((((((((((((((.((.....((((....))))))))))).((............))......))))))))))))).. ( -35.00)
>DroSim_CAF1 1381 120 + 1
CCGAUUCACCUUCUCCGUUUCAACACCCGGAGAAAUUAGGCGGUAAUUGAGACGGCACUCACUGCGACUUGUCCCGUCUGUCUGCAACUUUCAUUUAGCUCAAGAUCAGUUGCCGUUUUC
..........(((((((..........)))))))...((((((((((((((((((.((............)).))))))((((....((.......))....)))))))))))))))).. ( -32.80)
>consensus
CCGAUUCACCUUCUCCGUUUCAACACCCGGAGAAAUUAGGCGGUAAUUGAGACGGCACUCACUGGGACUUGUCCCGUCUGUCUGCAACUUUCAUUUAGCUCAAGAUCAGUUGCCGUUUUC
..........(((((((..........)))))))...((((((((((((((((((.((.....((((....))))))))))).((............))......))))))))))))).. (-30.87 = -31.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:34 2006